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Max Dudek

@maxdudek

PhD Candidate @ Penn 🧬 Genomics and Computational Bio πŸ’» https://orcid.org/0000-0001-8521-9543 Labs: @struangrant.bsky.social, Laura Almasy

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14.11.2024
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Latest posts by Max Dudek @maxdudek

I'll be at #ASHG25 this week! Check out my poster Wed 2:30-4:30, at 5071W.

"Bridging the GWAS-eQTL colocalization gap with insights from caQTL analyses" with @struangrant.bsky.social and Laura Almasy

14.10.2025 19:13 πŸ‘ 4 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0

Most p-value explanations that I've come across focus only on the mechanical process of calculation, without telling students why they're doing it or how to interpret the results. So this video is me attempting to motivate the concept of hypothesis testing from first principles.

29.08.2025 02:40 πŸ‘ 1 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
What is a p-value? #SoME4
What is a p-value? #SoME4 YouTube video by Max Dudek

My foray into video creation! This is my entry into #SoME4, an annual exposition of math-explainers. A friendly introduction to hypothesis testing, with minimal math background required.

www.youtube.com/watch?v=qEE0rzytHls

29.08.2025 02:39 πŸ‘ 1 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
Home - ProbGen 2026 Your Site Description

The 2026 Probabilistic Modeling in Genomics (ProbGen) meeting will be held at UC Berkeley, March 25-28, 2026. We have an amazing list of keynote speakers and session chairs:
probgen2026.github.io

Please help spread the news.

06.06.2025 17:52 πŸ‘ 69 πŸ” 36 πŸ’¬ 2 πŸ“Œ 0

Congrats!

10.06.2025 21:44 πŸ‘ 1 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0

Check out @maxdudek.bsky.social paper on fpQTLs!

www.cell.com/ajhg/fulltex...

05.06.2025 19:38 πŸ‘ 2 πŸ” 3 πŸ’¬ 0 πŸ“Œ 0

With @struangrant.bsky.social, @ajhgnews.bsky.social

Full text: authors.elsevier.com/a/1ky1DgeXDywz

17.04.2025 15:50 πŸ‘ 1 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
Preview
Characterization of non-coding variants associated with transcription-factor binding through ATAC-seq-defined footprint QTLs in liver Dudek etΒ al. use chromatin accessibility data in liver from 170 human donors to measure transcription factor binding at genetic variants. They observed 809 variants associated with binding. Given bind...

Our new paper is out today in AJHG! We applied a "footprinting" algorithm to ATAC-seq data from 170 livers to find non-coding variants associated with TF binding. We show that these "footprint QTLs" (#fpQTLs) can fine-map GWAS loci at base-pair resolution.
www.cell.com/ajhg/fulltex...

17.04.2025 15:49 πŸ‘ 18 πŸ” 7 πŸ’¬ 1 πŸ“Œ 0
Populism, Media Revolutions, and Our Terrible Moment
Populism, Media Revolutions, and Our Terrible Moment YouTube video by vlogbrothers

This is one of those videos that you could work on forever, but suddenly it felt very important to make it, so I finally did: www.youtube.com/watch?v=d8Pn...

22.11.2024 19:59 πŸ‘ 3869 πŸ” 993 πŸ’¬ 192 πŸ“Œ 311

Good to see @maxdudek.bsky.social on here now - here’s his recent preprint

22.11.2024 12:53 πŸ‘ 6 πŸ” 2 πŸ’¬ 0 πŸ“Œ 0