soft/living matter fanclub

L. Balasubramaniam, et al., Dynamic forces shape the survival fate of eliminated cells. Nat. Phys. 1–10 (2025). http://dx.doi.org/10.1038/s41567-024-02716-5

F. L. Lampart, et al., Morphometry and mechanical instability at the onset of epithelial bladder cancer. Nat. Phys. 1–10 (2025). http://dx.doi.org/10.1038/s41567-024-02735-2

G. Šneiderienė, et al., Lipid-induced condensate formation from the Alzheimer’s Aβ peptide triggers amyloid aggregation. Proc. Natl. Acad. Sci. U. S. A. 122, e2401307122 (2025). http://dx.doi.org/10.1073/pnas.2401307122

T. Tlusty, A. Libchaber, Life sets off a cascade of machines. Proc. Natl. Acad. Sci. U. S. A. 122, e2418000122 (2025). http://dx.doi.org/10.1073/pnas.2418000122

A. A. Fragkopoulos, F. Böhme, N. Drewes, O. Bäumchen, Metabolic activity controls the emergence of coherent flows in microbial suspensions. Proc. Natl. Acad. Sci. U. S. A. 122, e2413340122 (2025). http://dx.doi.org/10.1073/pnas.2413340122

J. Wang, J. E. Butler, A. J. C. Ladd, Microfluidic purification of genomic DNA. Proc. Natl. Acad. Sci. U. S. A. 122, e2417757122 (2025). http://dx.doi.org/10.1073/pnas.2417757122

D. Valverde-Mendez, et al., Macromolecular interactions and geometrical confinement determine the 3D diffusion of ribosome-sized particles in live Escherichia coli cells. Proc. Natl. Acad. Sci. U. S. A. 122, e2406340121 (2025). http://dx.doi.org/10.1073/pnas.2406340121

H. J. Oh, et al., Size-controlled assembly of phase separated protein condensates with interfacial protein cages. Nat. Commun. 16, 1–14 (2025). http://dx.doi.org/10.1038/s41467-025-56391-y

K. Tomohara, Y. Minagawa, H. Noji, Artificial cells with all-aqueous droplet-in-droplet structures for spatially separated transcription and translation. Nat. Commun. 16, 1–11 (2025). http://dx.doi.org/10.1038/s41467-024-55366-9

E. Han, et al., Local polar order controls mechanical stress and triggers layer formation in Myxococcus xanthus colonies. Nat. Commun. 16, 952 (2025). http://dx.doi.org/10.1038/s41467-024-55806-6

M. Burman, A. Noy, Atomic description of the reciprocal action between supercoils and melting bubbles on linear DNA. Phys. Rev. Lett. 134 (2025). http://dx.doi.org/10.1103/PhysRevLett.134.038403

J. Liang, et al., Glass transition in monolayers of rough colloidal ellipsoids. Phys. Rev. Lett. 134 (2025). http://dx.doi.org/10.1103/PhysRevLett.134.038202

W. D. Piñeros, É. Fodor, Biased ensembles of pulsating active matter. Phys. Rev. Lett. 134 (2025). http://dx.doi.org/10.1103/PhysRevLett.134.038301

L. A. Hoffmann, L. Giomi, Homochirality in the Vicsek model: Fluctuations and potential implications for cellular flocks. Phys. Rev. E. 111 (2025). http://dx.doi.org/10.1103/PhysRevE.111.015427

P. A. Haas, S. S. M. H. Höhn, Cut it out: Out-of-plane stresses in cell sheet folding of Volvox embryos. Phys. Rev. E. 111 (2025). http://dx.doi.org/10.1103/PhysRevE.111.014420

S. R. Noureen, R. L. Mort, C. A. Yates, Modeling adhesion in stochastic and mean-field models of cell migration. Phys. Rev. E. 111 (2025). http://dx.doi.org/10.1103/PhysRevE.111.014419

A. Despons, Nonequilibrium properties of autocatalytic networks. Phys. Rev. E. 111 (2025). http://dx.doi.org/10.1103/PhysRevE.111.014414

H. Noguchi, Spatiotemporal pattern formation of membranes induced by surface molecular binding/unbinding. Soft Matter (2025). http://dx.doi.org/10.1039/D4SM01277A

M. Safdari, S. Li, S. Panahandeh, P. van der Schoot, R. Zandi, Impact of the RNA binding domain localization of the protein shell on virus particle stability. arXiv [physics.bio-ph] (2025). https://arxiv.org/abs/2501.13891

C. Hanauer, et al., A model for self-organized growth, branching, and allometric scaling of the planarian gut. arXiv [physics.bio-ph] (2025). https://arxiv.org/abs/2501.11182

B. D. Shrestha, et al., Confinement-induced proliferation of vortices around marine invertebrate larvae. arXiv [physics.flu-dyn] (2025). https://arxiv.org/abs/2501.11744

S. Kapadia, A. Kudrolli, Boundary curvature-dependent dynamical trapping of undulating worms. arXiv [cond-mat.soft] (2025). https://arxiv.org/abs/2501.10783

G. Shi, S. Shin, D. Thirumalai, Static three-dimensional structures determine fast dynamics between distal loci pairs in interphase chromosomes. arXiv [physics.bio-ph] (2025). https://arxiv.org/abs/2501.10004

Z. Cao, C. Du, Z. Hou, P. G. Wolynes, Motorized chromosome models of mitosis. arXiv [physics.bio-ph] (2025). https://arxiv.org/abs/2501.09873

M. Álvarez-Alegría, P. Moreno-Spiegelberg, M. A. Matías, D. Gomila, Excitable dynamics and coral reef formation: A simple model of macro-scale structure development. arXiv [q-bio.PE] (2025). https://arxiv.org/abs/2501.10231

A. Jurado Jimenez, et al., 3D dynamic multiscale force and shape analysis of in-vivo elastic stress sensors. bioRxiv 2025.01.22.633835 (2025). https://www.biorxiv.org/content/10.1101/2025.01.22.633835v1

S. Dey, et al., Physical confinement regulates transition in nematode motility. bioRxiv 2025.01.22.633777 (2025). https://www.biorxiv.org/content/10.1101/2025.01.22.633777v1

H. Zhou, et al., Multi-scale structure of chromatin condensates rationalizes phase separation and material properties. bioRxiv 2025.01.17.633609 (2025). https://www.biorxiv.org/content/10.1101/2025.01.17.633609v1

N. Modi, et al., Transient pH changes drive vacuole formation in enzyme-polymer condensates. bioRxiv 2025.01.16.633379 (2025). https://www.biorxiv.org/content/10.1101/2025.01.16.633379v1

K. Rijal, P. Mehta, A differentiable Gillespie algorithm for simulating chemical kinetics, parameter estimation, and designing synthetic biological circuits. bioRxiv 2024.07.07.602397 (2024). https://www.biorxiv.org/content/10.1101/2024.07.07.602397v3