Huge preprint if you are interested in bacterial strain taxonomy! The why and how of cgMLST LIN codes: An extensively revised and expanded version doi.org/10.1101/2024... I will summarize it for you in this thread 👇
Overview of paper revealing role of arginine in regulating K. pneumoniae mucoidy.
Our paper reporting a highly conserved mechanism by which arginine positively regulates hypervirulent K. pneumoniae mucoid phenotype is now fully online.
rdcu.be/euiWG
Summary picture is below, but details in the 🧵
Este 10 de abril, saludamos a quienes investigan, y en este marco, a pensarse como trabajadores. Tiene que haber un horizonte común entre quienes investigan y el resto de los trabajadores. Porque sin ciencias no hay futuro deseable. Y sin condiciones dignas, no hay ciencias.
Este 20 de febrero se cumple un nuevo aniversario del nacimiento del científico y pensador Rolando García.
Doctor en Meteorología, vicepresidente fundador del CONICET, cofundador de la Universidad Nacional del Sur,y recordado decano de Exactas en la UBA entre 1957 y 1966.
Pasteur Course: Tuberculosis 🧫
Join a 2-week intensive course at the Institut Pasteur from June 2–13, 2025 to gain expertise in TB diagnosis, treatment & epidemiology. Including hands-on trainings & insights from leading experts.
Limited to 20 participants - apply by March 1, 2025 👉bit.ly/3Cr0ift
🌊 Food Traceability Using Genomic Tools 🧬
Join us for an online course with @marianilab.bsky.social & @shump.bsky.social , in February, to learn how cutting-edge genomic technologies (@illumina, @nanoporetech.com & qPCR) are revolutionising seafood traceability and sustainability
shorturl.at/Wsdyz
✨ Apoyan: @okfn.bsky.social, @nerdearla.bsky.social, @latambioimaging.bsky.social, UNC CCAD Supercómputo, Conectorial, LA-CoNGA Physics, ILDA, R-Ladies Buenos Aires, @abrir.bsky.social, PsiNet Lab, ARPHAI, DiploCientífica.
¡Gracias por acompañarnos! 🚀
🚨 GLLVMs: Advanced Multivariate Analysis of Ecological Communities in R with @vdveenb.bsky.social 🚨
📅 20-23 May
Learn to master Generalized Linear Latent Variable Models (GLLVMs)-a cutting-edge, flexible alternative to classical ordination methods for ecological data analysis📊
shorturl.at/WfdXK
What do you think are the critical features pathogen genomic data-sharing platforms require to meet the public health need? Please participate in this public consultation!
Our review is out in Nature Reviews Genetics! rdcu.be/d5AY2
We show how phylogeny-based methods can resolve the problem of non-independence in genomic datasets.
These methods must be considered an essential part of the comparative genomics toolkit.
@lauriebelch.bsky.social @stuwest.bsky.social
Join us for a new season of #KlebCkub! @klebclub.bsky.social
New speakers & new research!
Registration is FREE but mandatory.
Abstracts due by February 16!
Please share !
Link below👇🏻👇🏻
#KLEBS2024 replay now available at www.klebs-2024.conferences-pasteur.org/replay - great opportunity to catch-up about #Klebsiella or to relive the conference - enjoy!
New year, new assemblies!
I'm excited to announce Autocycler, my new tool for consensus assembly of long-read bacterial genomes!
It's the successor to Trycycler, designed to be faster and less reliant on user intervention.
Check it out: github.com/rrwick/Autoc...
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Line graph titled "Reported paralytic polio cases and deaths, United States, 1910 to 2019." The graph displays two lines: one representing the number of reported polio cases and the other indicating reported deaths over the years. The case count peaks in the 1950s, with deaths showing a similar trend. The x-axis represents the years (1910 to 2019), while the y-axis shows the number of cases and deaths.
Good day to recall some milestones in US polio history
1953 Worst recorded US outbreak kills more than 3000
1955 First polio vaccine licensed
1979 Polio considered eliminated from the United States
1994 Polio considered eliminated in North and South America
ourworldindata.org/grapher/repo...
Really exciting development from the @pathoplexus.org team, with a new curated database for mpox genomic data.
Glad to see these rapid data sharing efforts taking shape, guided by consistent, transparent governance and an ongoing commitment to equity and fairness.
Today Pathoplexus announces the inclusion of a new viral pathogen: mpox (previously known as monkeypox).
Within the context of the current mpox outbreaks and ongoing health concerns, Pathoplexus aims to support sequence sharing to improve both understanding and response.
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🚨 We’re thrilled to kick off the eDNA Metabarcoding course, funded by @ednacollab.bsky.social! 🌍 Researchers worldwide are joining us this week to learn how to analyse their eDNA data with guidance from an exceptional team of instructors.
@leeselab.bsky.social @shump.bsky.social
I started an #eDNA starter pack as one didn’t exist yet. Feel free to message me to get your name added. Open to all! go.bsky.app/U2vgV5Q
Please join us at 13:00 CET December 12th for the next edition of the IPSN webinar series 'Pathogen Genomics in Health Emergencies' to hear how genomics can contribute to the understanding of Cholera outbreaks. Register here:
How best to avoid the costs of bearing a #plasmid? Rosanna Wright @brockhurstlab.bsky.social @jpjhall.bsky.social &co find that #bacteria benefit from compensating plasmids by chromosomal (rather than plasmid-borne) mutations @plosbiology.bsky.social plos.io/3ODbXdN
Back in Argentina after the #KlebsiellaSymposium at @pasteur.fr. Grateful to the organizers @sylvainbrisse.bsky.social and @chcrestani.bsky.social for the opportunity to present my work on #Klebsiella in #Wastewater and to connect with brilliant researchers. Inspired and honored!
often overlooked in EDI strategies and key to perceptions of excellence. Language coaching not the only solution (takes extra time too): need to normalise non-native accents/accept different ways of expressing oneself
From here #Klebsiella genomics really ramped up, and we now have >100,000 genomes in NCBI!
There’s too much to cover here, but we summarised some of it in this 2020 review pubmed.ncbi.nlm.nih.gov/32055025/ & will hear a lot of new stuff at #KLEBS week. Look our for a conference report!
A small history lesson in #Klebsiella genomics in honour of #KLEBS24…
2009 was a big year for Klebs!
- First genome published
- First description of ST258 KPC-producing clone
pubmed.ncbi.nlm.nih.gov/19218573/
- First description of NDM-1 beta-lactamase
pubmed.ncbi.nlm.nih.gov/19770275/
Let's increase #klebclub chatter on 🔵🦋!
Klebsiella aficionados add your handle below and we will build a starter pack.
🔁 to spread the word
Lots of people are missing, let us know if you want to be included by replying!
You can also share to help us gain visibility
#MicroSky
go.bsky.app/EdereoU
Very much enjoying #Klebsiella2024 with great talks.
Some absolutely shocking data around AMR and mortality in neonatal infections in LMICs, which do not have access to new (and very few) drugs that still work.
Interesting One Health study on Klebsiella pneumonie in Norway, which seems to confirm that there is little (but not no) spillover between human and non-human niches
www.biorxiv.org/content/10.1...
Presented by Marit Hetland #Klebsiella2024
