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Shamphavi Sivabalasarma

@sshamphavi

Postdoc in Navarro lab, DMF-UNIL,Switzerland Jumping between bacterial and archaeal domains with a microscope β„οΈπŸ”¬#teamtomo

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05.11.2023
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Latest posts by Shamphavi Sivabalasarma @sshamphavi

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Asgard archaea: have we found our microbial ancestors? - The EMBO Journal The discovery of Asgard archaea about a decade ago has greatly reshaped our understanding of archaeal evolution and the origin of eukaryotes. Asgards are currently thought to be the closest prokaryoti...

Our Review Article is online!
We are happy to share our summary about molecular and cellular biological discoveries in archaea that have long foreshadowed a close relationship to eukaryotes, which is now so well manifested in the Asgard archaea.

link.springer.com/article/10.1...

06.03.2026 07:15 πŸ‘ 4 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0
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Prediction of eukaryotic cellular complexity in Asgard archaea using structural modelling - Nature Microbiology A structural catalogue of the Asgard archaeal pangenome reveals hundreds of eukaryotic-like proteins that suggest a higher degree of cellular complexity in the archaeal ancestor of eukaryotes.

🧡 1/10 New paper out in @natmicrobiol.nature.com from my postdoc at @mib-wur.bsky.social! πŸŽ‰

How eukaryote-like was the archaeal ancestor of eukaryotes? Sequence searches alone can't tell us β€” so we used protein structure prediction to look deeper. 🧬
www.nature.com/articles/s41...

05.03.2026 10:46 πŸ‘ 65 πŸ” 34 πŸ’¬ 3 πŸ“Œ 3
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Prediction of eukaryotic cellular complexity in Asgard archaea using structural modelling - Nature Microbiology A structural catalogue of the Asgard archaeal pangenome reveals hundreds of eukaryotic-like proteins that suggest a higher degree of cellular complexity in the archaeal ancestor of eukaryotes.

Prediction of eukaryotic cellular complexity in Asgard archaea using structural modelling www.nature.com/articles/s41... #jcampubs

05.03.2026 14:33 πŸ‘ 7 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0
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Diversity, ecology, cell biology and evolution of the Asgard archaea - Nature Reviews Microbiology The Asgard archaea have become a cornerstone of archaeal research, particularly for studies aiming to unravel the origin and early evolution of eukaryotes. This Review outlines the current state of th...

Diversity, ecology, cell biology and evolution of the Asgard archaea
#microbiology #archaea #eukaryotes #evolution #MicroSky #ArchaeaSky
@natrevmicro.nature.com
www.nature.com/articles/s41...

05.03.2026 15:03 πŸ‘ 3 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0

🧡 Proud to present a tour de force by postdoc @gregbwhitfield.bsky.social solving the mystery of how bacterial Tad pili can extend and retract with a single motor ATPase. Great collaboration with Lynne Howell, @dr-lori-burrows.bsky.social, @ianyyen.bsky.social www.biorxiv.org/content/10.6...

26.02.2026 15:56 πŸ‘ 41 πŸ” 15 πŸ’¬ 1 πŸ“Œ 1

Very cool work led by @diorgeps.bsky.social from the labs of @archaeon-alex.bsky.social & Joey Davis (MIT)!

They solved the Haloferax volcanii ribosome and characterize AHA, a conserved archaeal hibernation factor.

With several recent related preprints, it’s an exciting moment for the field!

23.02.2026 11:14 πŸ‘ 12 πŸ” 4 πŸ’¬ 0 πŸ“Œ 0

Beyond thrilled to share that our study has been published!
This project encompasses years of work, including my thesis research on Asgard archaea in the @archaeal.bsky.social lab at @utmsi.bsky.social and
@texasscience.bsky.social!!!
#MicroSky #ArchaeaSky 1/12

18.02.2026 16:22 πŸ‘ 69 πŸ” 30 πŸ’¬ 8 πŸ“Œ 2
Ξ²-strand complementation within tip initiation complexes licenses assembly of diverse type IV filaments

SIGNIFICANCE
Prokaryotic type IV filaments are ancient, diverse, and broadly distributed nanomachines that
assemble and retract to execute diverse microbial functions. They include type IV pili and type II
secretion systems, mediating toxin secretion, motility, surface adhesion, biofilm formation, DNA
uptake, and other functions. Here, we show that two widely conserved subunits of the tip, PilI
and PilJ, form a module that recognizes the folding of a Ξ²-sheet in a third subunit, PilK. The final
Ξ²-strand in this sheet can be supplied in trans by the last ~10 aminoacyl residues of large
PilC/PilY1 adhesins, or in cis by PilK itself. In a working model, this recognition results in
formation of a PilIJK trimer, which then licenses fiber polymerization through a templating
mechanism.

Ξ²-strand complementation within tip initiation complexes licenses assembly of diverse type IV filaments SIGNIFICANCE Prokaryotic type IV filaments are ancient, diverse, and broadly distributed nanomachines that assemble and retract to execute diverse microbial functions. They include type IV pili and type II secretion systems, mediating toxin secretion, motility, surface adhesion, biofilm formation, DNA uptake, and other functions. Here, we show that two widely conserved subunits of the tip, PilI and PilJ, form a module that recognizes the folding of a Ξ²-sheet in a third subunit, PilK. The final Ξ²-strand in this sheet can be supplied in trans by the last ~10 aminoacyl residues of large PilC/PilY1 adhesins, or in cis by PilK itself. In a working model, this recognition results in formation of a PilIJK trimer, which then licenses fiber polymerization through a templating mechanism.

Here's the preprint. Looking forward to seeing what the type 4 filament community thinks!

www.biorxiv.org/content/10.6...

20/20

16.02.2026 20:22 πŸ‘ 15 πŸ” 5 πŸ’¬ 1 πŸ“Œ 0
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Thermophilic bacteria employ a contractile injection system in hot spring microbial mats Abstract. Bacterial contractile injection systems (CISs) are multiprotein complexes that facilitate the bacterial response to environmental factors or inte

Contractile Injection Systems - Hot Springs - cryoET: Read the final version of our paper here:
academic.oup.com/ismej/advanc...
#microsky #teamtomo

11.02.2026 14:43 πŸ‘ 27 πŸ” 9 πŸ’¬ 0 πŸ“Œ 1
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Postdoc in Archaea Microbiology - Vacancy at Aarhus University Vacancy at Department of Biology - Microbiology, Aarhus University

Postdoc position on Asgard archaea in Thiago’s new lab for someone well trained in biochemistry, cloning, and protein purification:
international.au.dk/about/profil...

10.02.2026 14:36 πŸ‘ 16 πŸ” 15 πŸ’¬ 0 πŸ“Œ 1

This work started as a bachelor project and @1nussi1.bsky.social and @felixgrunberger.bsky.social showed that CsmR is a very interesting regulator important for controlling motiliy and cellshape in Haloferax volcanii.

The preprint is out now: www.biorxiv.org/content/10.6...

04.02.2026 09:34 πŸ‘ 7 πŸ” 2 πŸ’¬ 2 πŸ“Œ 1
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Multiple protein structure alignment at scale with FoldMason Protein structure is conserved beyond sequence, making multiple structural alignment (MSTA) essential for analyzing distantly related proteins. Computational prediction methods have vastly extended ou...

FoldMason is out now in @science.org. It generates accurate multiple structure alignments for thousands of protein structures in seconds. Great work by Cameron L. M. Gilchrist and @milot.bsky.social.
πŸ“„ www.science.org/doi/10.1126/...
🌐 search.foldseek.com/foldmason
πŸ’Ύ github.com/steineggerla...

30.01.2026 06:11 πŸ‘ 300 πŸ” 147 πŸ’¬ 4 πŸ“Œ 3
Post image Post image Post image Post image

Archaea may not be well known, nor well studied, but these microorganisms can live in the most extreme environments, but also right on our skin. They’re everywhere.

EMBL researchers are now exploring their unique ecosystem adaptability and link to evolution.

www.embl.org/news/science...

29.01.2026 09:36 πŸ‘ 44 πŸ” 9 πŸ’¬ 1 πŸ“Œ 2
Researcher Florian Wollweber standing next to a cryo-focused ion beam microscope in a laboratory, with technical infrastructure visible in the background.

Researcher Florian Wollweber standing next to a cryo-focused ion beam microscope in a laboratory, with technical infrastructure visible in the background.

The origin of eukaryotic cells continues to be one of the greatest mysteries in biology.

EMBL Grenoble is excited to welcome Florian Wollweber, who will use cutting-edge imaging techniques to study Asgard archaea β€” microbes closely related to our earliest ancestors. πŸ¦ πŸ”¬

www.embl.org/news/people-...

28.01.2026 10:56 πŸ‘ 86 πŸ” 20 πŸ’¬ 4 πŸ“Œ 0
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US science after a year of Trump: what has been lost and what remains A series of graphics reveals how the Trump administration has sought historic cuts to science and the research workforce.

Trump has been in office for one year. We at @nature.com did a deep dive looking at the administration's disruption of science in numbers.

Take a lookβ€”the numbers are staggering. By me, @dangaristo.bsky.social, Jeff Tollefson, @kimay.bsky.social, & help from @noamross.net @scott-delaney.bsky.social

20.01.2026 18:08 πŸ‘ 505 πŸ” 318 πŸ’¬ 10 πŸ“Œ 30

Thank you!!

18.01.2026 16:35 πŸ‘ 0 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

Thank you Ariane!

15.01.2026 20:26 πŸ‘ 0 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

Thank you!!

15.01.2026 20:26 πŸ‘ 0 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

Congrats! It has been a pleasure to have you in the lab and I am lokking forward seeing what you will achieve in the future!

15.01.2026 12:03 πŸ‘ 2 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0

Finally done! Huge thanks to @sfb1381.bsky.social @archaellum.bsky.social at the @biologyunifreiburg.bsky.social and @uni-freiburg.de and all my collaborators over the last years. It was a lot of fun πŸŽ‰πŸŽ‰πŸŽŠ and now soon off to new challenges!

15.01.2026 12:00 πŸ‘ 20 πŸ” 2 πŸ’¬ 5 πŸ“Œ 0
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Genomic clues to the origin of eukaryotic cells How did eukaryotic cells with complex architecture evolve from simpler prokaryotic cells? DNA analyses offer possible answers.

How did eukaryotic cells with complex architecture evolve from simpler prokaryotic cells? DNA analyses offer possible answers

go.nature.com/4sEMwLH

14.01.2026 16:51 πŸ‘ 65 πŸ” 25 πŸ’¬ 0 πŸ“Œ 1

Nice to see our story on the bacterial archaellum as one of the #editorpicks of 2025!

20.12.2025 10:26 πŸ‘ 3 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0
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A big thanks to all the authors, reviewers, and readers of Nature Microbiology for their love and support throughout the year.

We are on a break & will be back on Jan 2nd, in what will be a very special year for us!

In the meantime, enjoy a collage made by @francoismayer.bsky.social

#MicroSky 🦠

19.12.2025 20:46 πŸ‘ 40 πŸ” 5 πŸ’¬ 1 πŸ“Œ 0
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Dynamic protrusions mediate unique crawling motility in Asgard Archaea (Promethearchaeota) Crawling motility is a hallmark of eukaryotic cells and requires a dynamic actin cytoskeleton, regulated adhesion, and spatially organized signalling pathways1–3. Asgard archaea (phylum Promethearchae...

1. As we recently joined BlueSky, we want to repost this story for all newcomers!

We sat down with @radler92.bsky.social to get more insight into the unique videos from his recent preprint on Promethearchaeota (formerly Asgard archaea).

doi.org/10.1101/2025...

(Videos and info below)

18.12.2025 14:08 πŸ‘ 28 πŸ” 15 πŸ’¬ 2 πŸ“Œ 0
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Calling all archaeal enthusiasts! πŸ”¬πŸ”₯ From molecular machines to microbial communities, Archaea never fail to surprise us!
We are excited to announce the 2026 EMBO Workshop on the Molecular Biology of Archaea, 6–10 July in Cambridge, UK!
Sign up here: meetings.embo.org/event/26-arc...
#ArchaeaSky

16.12.2025 14:18 πŸ‘ 42 πŸ” 27 πŸ’¬ 2 πŸ“Œ 1
Molecular Biology of Archaea: Life Through the Prism of Archaea In 1977, Woese and colleagues revealed Archaea as a distinct domain of life. Building on this insight, the discovery of Asgard archaea has strengthened the view that many hallmarks of eukaryotic cell…

Are you a long-time fan of Archaea, an extremophile-phile, or are you simply curious?

Either way, we have good news.
We’re delighted to announce the 2026 EMBO Workshop on Archaea, 6–10 July.

Sign up: meetings.embo.org/event/26-arc...

We look forward to seeing you in Cambridge, UK.

Please repost!

16.12.2025 12:00 πŸ‘ 78 πŸ” 51 πŸ’¬ 2 πŸ“Œ 1
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Like last year, I compiled a little collage of all our monthly issue covers published in @natmicrobiol.nature.com Another year full of new discoveries, stunning advances and marvelous #microbiology. Thanks to all our authors for all their hard work in pushing the field of microbiology forward.

08.12.2025 17:24 πŸ‘ 26 πŸ” 6 πŸ’¬ 1 πŸ“Œ 0
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Dynamic protrusions mediate unique crawling motility in Asgard Archaea (Promethearchaeota) Crawling motility is a hallmark of eukaryotic cells and requires a dynamic actin cytoskeleton, regulated adhesion, and spatially organized signalling pathways1–3. Asgard archaea (phylum Promethearchae...

Asgard on the move ! Watch our videos!
Biorxiv.org/content/10.1101/2025.11.30.690169v1

03.12.2025 20:22 πŸ‘ 27 πŸ” 12 πŸ’¬ 0 πŸ“Œ 0
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Nutrient availability affects optimal growth strategy in predatory DPANN | mSystems The bacterial and archaeal domains each possess a major clade that appears to be predominantly host-associated (1–3). These two lineages, Patescibacteriota and DPANN archaea (named for the Diapherotri...

Ever since publishing our observations of the predatory behaviour of Ca. Nha. antarcticus people have asked me why it would want to kill its host. My perspective discussing the ecological factors that I believe led to this behaviour is out now in mSystems:
doi.org/10.1128/msystems.01475-25

18.11.2025 17:30 πŸ‘ 15 πŸ” 7 πŸ’¬ 1 πŸ“Œ 0

Pleased to share our review on S-layers with @bupbuse.bsky.social, Andriko von KΓΌgelgen, and @tbharat-lab.bsky.social, where we explore recent advances and argue that deeper insight into S-layers is key to deciphering microbial interactions and community organization. @mpi-bio-fml.bsky.social

13.11.2025 21:16 πŸ‘ 15 πŸ” 9 πŸ’¬ 0 πŸ“Œ 0