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Aaron Vogan

@fungage-lab

Researches fungal evolution/genetics/genomics. Associate professor at the University of Uppsala, investigating accessory genomes and giant TEs in Fungi.

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10.05.2024
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Latest posts by Aaron Vogan @fungage-lab

#TEworldwide #TEsky

05.03.2026 13:13 πŸ‘ 20 πŸ” 7 πŸ’¬ 0 πŸ“Œ 0

Fungal genome sequencing for free! πŸ‘‡πŸΌ #GGFungi2026

03.03.2026 06:47 πŸ‘ 9 πŸ” 12 πŸ’¬ 0 πŸ“Œ 0
MBE | The evolutionary genomics of meiotic drive

Meiotic drivers gain transmission advantages by distorting equal, Mendelian segregation. This review discusses the evolutionary genomics of meiotic drive. The figure highlights the interactions of meiotic drive elements with other classes of selfish genetic elements including: direct interactions between drivers and transposable elements (TEs) (A) or satellites (C) that can facilitate the spread of drivers; other drive systems that cause the mutual destruction of all gametes (B; e.g. the presence of multiple toxin-antidote systems); indirect interactions where the host machinery responsible for silencing TEs are recruited to silence drivers (D); dosage-sensitive interactions involving sex-linked drivers that result in gene amplifications (E); and tradeoffs between suppressing drive and TEs (F).

MBE | The evolutionary genomics of meiotic drive Meiotic drivers gain transmission advantages by distorting equal, Mendelian segregation. This review discusses the evolutionary genomics of meiotic drive. The figure highlights the interactions of meiotic drive elements with other classes of selfish genetic elements including: direct interactions between drivers and transposable elements (TEs) (A) or satellites (C) that can facilitate the spread of drivers; other drive systems that cause the mutual destruction of all gametes (B; e.g. the presence of multiple toxin-antidote systems); indirect interactions where the host machinery responsible for silencing TEs are recruited to silence drivers (D); dosage-sensitive interactions involving sex-linked drivers that result in gene amplifications (E); and tradeoffs between suppressing drive and TEs (F).

For a new MBE Review, Presgraves et al. argue that many features of genome evolution, content, and organization seemingly inexplicable by adaptation or nearly neutral processes are instead best accounted for by meiotic drive.

πŸ”— academic.oup.com/mbe/article/...

#evobio #molbio

02.03.2026 09:30 πŸ‘ 22 πŸ” 13 πŸ’¬ 1 πŸ“Œ 0
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(PDS) Targeting Septal Plugging to Disrupt the Evolution of Antifungal Resistance in Hyphal Networks at The University of Manchester on FindAPhD.com PhD Project - (PDS) Targeting Septal Plugging to Disrupt the Evolution of Antifungal Resistance in Hyphal Networks at The University of Manchester, listed on FindAPhD.com

PhD Opportunity: Are you interested in evolutionary biology and the global challenge of antifungal resistance?
We are seeking a motivated candidate for a President’s Doctoral Scholar Award
πŸ“…Deadline: March 16 2026
πŸ“Location: @manchester.ac.uk @fbmh-uom.bsky.social www.findaphd.com/phds/project...

19.02.2026 16:45 πŸ‘ 4 πŸ” 11 πŸ’¬ 1 πŸ“Œ 0

@fburki.bsky.social

05.02.2026 07:56 πŸ‘ 2 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

A permanent position as a research scientist is opened in our team! We look for a plant physiologist with expertise in plant / microorganism interactions to identify plant susceptibility factors to fungal disease. Please forward!

31.01.2026 18:35 πŸ‘ 23 πŸ” 35 πŸ’¬ 0 πŸ“Œ 0
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Doctoral Researcher (m/f/div) in Microbial Genetic Engineering - Leibniz-HKI

πŸ“£ Job opportunity: I’m still looking for an enthusiastic PhD student to join my lab @leibniz-hki.de who is interested in fungal natural product research and genetic engineering. We’ll work on an interdisciplinary project with the team of @luziagyr.bsky.social πŸ‘‡πŸ»

www.leibniz-hki.de/en/job-offer...

21.01.2026 13:20 πŸ‘ 10 πŸ” 18 πŸ’¬ 1 πŸ“Œ 2
Uppsala in late autumn

Uppsala in late autumn

Join us at the Evolutionary Biology Centre at Uppsala University. We’re searching for an Assistant Professor in Biology. www.uu.se/en/about-uu/...

28.01.2026 20:28 πŸ‘ 158 πŸ” 186 πŸ’¬ 1 πŸ“Œ 5
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Institut Pasteur (@pasteur.fr) is recruiting new young PIs to open new groups in the Institute. Deadline is February 9th! Don't miss the opportunity!

27.01.2026 18:56 πŸ‘ 34 πŸ” 49 πŸ’¬ 0 πŸ“Œ 0
Tri-I MMPTP | Duke Department of Molecular Genetics and Microbiology

Call for applications to the Postdoctoral Positions in the Tri-Institutional Molecular Mycology and Pathogenesis Training Program (Tri-I MMPTP) at Duke University, UNC-Chapel Hill, and North Carolina State University mmptp.mgm.duke.edu

26.01.2026 20:43 πŸ‘ 9 πŸ” 10 πŸ’¬ 0 πŸ“Œ 2

VACANCY - We're looking for a Postdoctoral Researcher to join the @philcarella.bsky.social Group, working in the field of Evo-MPMI (Evolutionary Molecular Plant-Microbe Interactions).

okt.to/yIlgTU

Closing date - 10 February 2026
Salary - Β£37,500 - Β£45,350
Contract - Full-time, 3 years

22.01.2026 13:51 πŸ‘ 6 πŸ” 15 πŸ’¬ 0 πŸ“Œ 0
Convergent Research - Fungal Community Project Coordinator Cultivarium is a Convergent Research Focused Research Organization (FRO) with a mission to accelerate the adoption of novel microorganisms for biotechnology. We are looking for experts who can contrib...

Cultivarium are looking to hire a dedicated fungal community coordinator: jobs.lever.co/convergentre...

I met some of the team in 2024 and they have some really cool projects on the go and are keen on fungi!

19.01.2026 11:25 πŸ‘ 2 πŸ” 1 πŸ’¬ 0 πŸ“Œ 1

This position is still open. The Weisberg lab is recruiting a postdoc or Ph.D. student to study horizontal gene transfer in plant-associated microbial communities. Please see the job ad for more information and feel free to contact me if you have any questions!

14.01.2026 23:57 πŸ‘ 24 πŸ” 33 πŸ’¬ 0 πŸ“Œ 0

We have reached 10% of our goal and have enough for one travel award! Amazing! Thank you to those who donated πŸ™πŸ» We aim to raise funds for nine more travel awards. Let’s keep the momentum! gofund.me/c8eaea7df
@ima-mycology.org

13.01.2026 23:46 πŸ‘ 3 πŸ” 2 πŸ’¬ 0 πŸ“Œ 0
Black field with a macro image of a bright orange lichen Xanthoria in one of the corner. Little diagrams showing a structure of a lichen thallus with different layers in grey and green, a phylogenetic tree, and an alphafold generated structure of a protein. White text says "PhD position in Stockholm University / SciLifeLab. 
Lichen Biology, Symbiosis, Microbial Ecology & Evolution,Meta-omics
Fully funded for 4 years. Start Apr-Sep 2026. Deadline for application: Feb 1st."

Black field with a macro image of a bright orange lichen Xanthoria in one of the corner. Little diagrams showing a structure of a lichen thallus with different layers in grey and green, a phylogenetic tree, and an alphafold generated structure of a protein. White text says "PhD position in Stockholm University / SciLifeLab. Lichen Biology, Symbiosis, Microbial Ecology & Evolution,Meta-omics Fully funded for 4 years. Start Apr-Sep 2026. Deadline for application: Feb 1st."

⚑️Fully funded #PhD position in my lab at Stockholm University / SciLifeLab! If you’re interested in #lichens, #symbiosis, fungal biology, or meta-omics, please apply. Deadline Feb 1. Read more here: su.varbi.com/en/what:job/...

12.01.2026 14:15 πŸ‘ 63 πŸ” 60 πŸ’¬ 1 πŸ“Œ 1
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Facultative heterochromatin mediated by core and accessory chromosome-encoded H3K27-specific methyltransferases controls virulence in a fungal phytopathogen Abstract. In many fungal phytopathogens, infection is regulated by accessory genomic regions enriched in facultative heterochromatin, but the precise role

Beyond excited to see this work finally out in @narjournal.bsky.social! We show that epigenetic modifiers on fungal accessory chromosomes can contribute to the overall epigenetic profile. Many thanks to @gomezlucia93.bsky.social and our other amazing collaborators πŸ‘πŸ»

academic.oup.com/nar/article/...

07.01.2026 15:39 πŸ‘ 34 πŸ” 19 πŸ’¬ 1 πŸ“Œ 1

The one that abstained: Psilocybe fuscofulva genome suggests two recent origins of the psilocybin gene cluster in Psilocybe https://www.biorxiv.org/content/10.64898/2025.12.30.697041v1

02.01.2026 21:31 πŸ‘ 2 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0

Just a few days left to apply to the PhD position in our group. It focuses on selfish genes in #fungi and how they might affect the spread of giant #TEs called Starships.

17.12.2025 06:55 πŸ‘ 11 πŸ” 10 πŸ’¬ 0 πŸ“Œ 0
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Historic transposon mobilisation waves create distinct pools of adaptive variants in a major crop pathogen - Nature Communications In this study, the authors analysed a large genomic dataset to trace how jumping genes shaped the global spread of a major wheat pathogen and reveal bursts of activity over decades that drove adaptati...

TEs aren’t just genomic parasites, they’re also engines of genomic novelty.

Our new study with ~2,000 Z. tritici genomes shows repeated TE mobilization waves during global expansion.

With @danielcroll.bsky.social & @guidopuccetti.bsky.social

🧬 www.nature.com/articles/s41...

#TEworldwide

12.11.2025 13:17 πŸ‘ 73 πŸ” 37 πŸ’¬ 0 πŸ“Œ 1

Would you say that Neurospora crassa is declining as a model organism for fungal biology?

πŸ’› No way, that orange fun-guy is alive and well!
πŸ”΄ Yeah, not so many people work with it nowadays ...
πŸ”΅ Neuro-who?

πŸ“… Ends: December 31, 2025, 10:03 PM UTC

πŸ“Š Show results

10.12.2025 21:06 πŸ‘ 2 πŸ” 3 πŸ’¬ 0 πŸ“Œ 0

A recent shift in centromere size and DNA content in Podospora pseudocomata co-occurs with the loss of a fungal genome defense system https://www.biorxiv.org/content/10.64898/2025.12.02.690432v1

03.12.2025 02:31 πŸ‘ 6 πŸ” 8 πŸ’¬ 0 πŸ“Œ 0
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New preprint: πŸš€πŸ§¬ Starship in the genome of the lichen fungus Xanthoria. Discovery of giant transposons Starships challenged what we thought we knew about fungal genomes. But what about Starships in #lichen fungi? Let us present Tangerine! πŸ–₯️ πŸ§ͺ 🦠 🧫 #SymbioSky doi.org/10.1101/2025...

28.11.2025 14:20 πŸ‘ 56 πŸ” 21 πŸ’¬ 1 πŸ“Œ 1
Image of yeast spotted on an agar plate. Some grow well, others are dying.

Image of yeast spotted on an agar plate. Some grow well, others are dying.

We're looking for a PhD student! If you're interested in #fungal #genomics & #TEs, meiotic drive, or pathogens, please consider applying. The project is about toxin/antidote genes in the human fungal pathogen A. fumigatus. uu.varbi.com/en/what:job/...

19.11.2025 09:20 πŸ‘ 21 πŸ” 30 πŸ’¬ 1 πŸ“Œ 1
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The virulence gene ToxB is both amplified and disrupted by transposons in the wheat pathogen Pyrenophora tritici-repentis ### Competing Interest Statement The authors have declared no competing interest. Agriculture and Agri-Food Canada, https://ror.org/051dzs374 Alberta Grain Saskatchewan Wheat Development Commissio...

Our latest pre-print on TE-mediated tandem duplication of the ToxB effector is now online...still a puzzle for us but we think it is in a Helitron! Together with amazing collaborators, Reem Aboukhaddour and Ryan Gourlie #TE #fungi
www.biorxiv.org/content/10.1...

18.11.2025 16:22 πŸ‘ 33 πŸ” 14 πŸ’¬ 0 πŸ“Œ 0
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We are looking for a PhD student to work on an exciting plastid endosymbiosis in microbial eukaryotes. This position involves sampling, exciting microscopy such as CARDFISH, ExM and FIBSEM, single-cell transcriptomics and more. #protistsonsky 1/2

12.11.2025 09:50 πŸ‘ 79 πŸ” 66 πŸ’¬ 2 πŸ“Œ 3

Exciting news! I have two positions open in my lab at the UoManchester: one PDRA and one Research Tech.
Join our team to study evolutionary mycology and help us understand antifungal resistance in fungal pathogens. A fantastic opportunity to join the brilliant Manchester Fungal Infection Group!

05.11.2025 15:35 πŸ‘ 18 πŸ” 33 πŸ’¬ 2 πŸ“Œ 0
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New research in #GENETICS suggests accessory chromosomes in #fungi #fusarium might be maintained because of Spok genes and not because of their beneficial effects on virulence.

Learn more about this work from @fungage-lab.bsky.social and colleagues: buff.ly/R2CRa3O

04.11.2025 21:02 πŸ‘ 11 πŸ” 6 πŸ’¬ 0 πŸ“Œ 0
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We are inviting applications for a postdoctoral researcher to support the Laboratory of Fungal Ecology and Evolution, and join our project studying obligatory multitrophic interactions. jobs.bc.cas.cz/en/detail/266 #LFEE #LuminaQuaeruntur #postdoc #hiring

31.10.2025 05:28 πŸ‘ 6 πŸ” 6 πŸ’¬ 0 πŸ“Œ 0
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1/ Ever needed to annotate TEs in a fungal genome, but didn't know where to start?

We have released #MycoMobilome, a community-focused non-redundant database of transposable element consensus sequences for the fungal kingdom, constructed from >4,000 fungal genomes!

www.biorxiv.org/content/10.1...

29.10.2025 09:02 πŸ‘ 65 πŸ” 38 πŸ’¬ 1 πŸ“Œ 2
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Jumbo phage–mediated transduction of genomic islands | PNAS Bacteria acquire new genes by horizontal gene transfer, typically mediated by mobile genetic elements (MGEs). While plasmids, bacteriophages, and c...

@prczhaoyansong.bsky.social’s deep dive into the dark matter of compost communities is now out πŸŽ‰ Genomic islands hijack jumbo phagesβ€”whose capsids enable transfer of large tracts of DNAβ€”shedding new light on the scale & scope of phage-mediated gene flow 😎

www.pnas.org/doi/10.1073/...

28.10.2025 18:36 πŸ‘ 71 πŸ” 46 πŸ’¬ 1 πŸ“Œ 2