Hackathon participants group picture
We had an amazing OME-NGFF hackathon last week, Wednesday to Friday, following the inspiring OME-NGFF symposium. What a fantastic week! It’s hard to describe how motivating it is to be surrounded by so many talented, curious & friendly people who care deeply about open, FAIR bioimaging data.
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Very happy to share our latest work extending iterative immunofluorescence to in toto imaging of early zebrafish embryos (3D-4i), integrated with a 3D-dedicated image analysis pipeline! 🐟🔬📊
Huge kudos to Max Hess for this PhD milestone! 💪
@lucaspelkmans.bsky.social shorturl.at/cO0u7
Let's zoom in!
See this? This = implanting mouse embryo. Usually this happens inside its mother and is invisible to us, but we can actually watch implantation ex vivo with the hope of understanding why implantation goes awry in embryos of older women. A 🧵...
Hey @cryaaa.bsky.social , looks amazing! Is it possible to give SpinePy a try already?
Cooooongrats @paulknabl.bsky.social !!!! 🥳🥳
How can cells self-organize rapidly into complex patterns during development?
Let’s explore a powerful and underappreciated mechanism: Directed Cell Migration (DCM).
Preprint @biorxivpreprint.bsky.social : doi.org/10.1101/2025...
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📣 Symposium 2050 at the University of Zurich
Join us for this event exploring emerging directions in life sciences, presented by a diverse group of leading experts.
Free and open to all! More info/register:
ema.uzh.ch/RTTHF
🚀 We’re very excited to share our latest preprint on OME-Zarr! 🚀
Our report on the 2024 OME-NGFF Workflows Hackathon is a deep dive into the status of OME-Zarr and the great work that happened last November at the BioVisionCenter in Zurich.
🔗 Read the preprint: osf.io/preprints/bi...
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We present a simple yet comprehensive model integrating multiple mechanical forces to guide lung development.
These principles operate during both development and disease, providing a dynamic framework to understand and predict lung remodeling processes.
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Big parts of my PhD work is now out on bioRxiv!!
We look at how biophysical parameters shape the fractal lung during development and disease.
Go check it out:
www.biorxiv.org/content/10.1...
How does an #embryo build an energy-efficient #fractal #lung in time for the first breath at birth? 🫁
Discover the mechanical forces shaping the bronchial tree in our latest preprint: #LungDevelopment #Mechanobiology
doi.org/10.1101/2025...
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Wow!! 🤩
