Émeline Favreau's Avatar

Émeline Favreau

@emelinefavreau

Computational Biologist for CG-TIC, a collaboration between University of Cambridge and GSK. Wrangling Chronic Kidney Disease data: omics & Electronic Health Records

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Latest posts by Émeline Favreau @emelinefavreau

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The Blue Journal thanks Eckart De Bie, MD, MPhil, for his contribution to the January issue

Inflammation and Obesity Correlate in Pulmonary Hypertension but Associate with Diverging Outcomes
@mark-toshner.bsky.social

academic.oup.com/ajrccm/artic...

18.02.2026 18:51 👍 7 🔁 3 💬 0 📌 0

Has the MRC research funding ‘pause’ been covered by any major news network?

It feels like it should be a major news story

28.01.2026 06:19 👍 28 🔁 11 💬 8 📌 4
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Genomic heterogeneity inflates the performance of variant pathogenicity predictions www.biorxiv.org/content/10.1... 🧬🖥️🧪 "we identify the best-performing models for each variant type and establish a benchmark to guide future progress"

09.09.2025 15:55 👍 2 🔁 2 💬 0 📌 0
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Seqera Sessions, Cambridge, UK Join us in Cambridge for a day of hands-on training and expert talks at the intersection of bioinformatics, research, and innovation. Whether you’re new to Nextflow or looking to deepen your expertise...

If you're in Cambridge next week, join us for a day of Nextflow training and featured talks, including from @genomicsengland.bsky.social. Plus, networking with the @seqera.io team, including @evanfloden.bsky.social, co-creator of Nextflow! 👩‍💻

We hope to see you there! hubs.la/Q03GRlRB0

04.09.2025 08:52 👍 3 🔁 4 💬 0 📌 0

Expressions of Interest OPEN for #BattenDisease Grant Round. The top priority research lines are so inspiring: best gene-targeted #therapy? which valid, reliable #biomarkers? Can disease progression be halted or reversed? Apply here: bdsrafoundation.org/wp-content/u...

21.08.2025 09:11 👍 1 🔁 1 💬 0 📌 0
BDFA Response to NICE Final Draft Guidance not Recommending Cerliponase Alfa for Treating Neuronal Ceroid Lipofuscinosis Type 2 (CLN2) | Batten Disease Family Association (BDFA)

Some kids are apparently too expensive to treat.

The UK’s National Institute for Health and Care Excellence (NICE) decided it will stop recommending the ONLY approved treatment for CLN2 Batten Disease.

They cite a lack of proof of long-term effectiveness and, surprise, cost.

Obscenely cruel.

15.08.2025 04:45 👍 0 🔁 2 💬 0 📌 0
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Group Leader - Genome Biology Unit Are you ready to lead groundbreaking research in Genome Biology? Join us at EMBL! We are seeking a motivated scientist to lead an independent research group addressing exciting and original biological...

To all post-docs: The Genome Biology dept ‪@embl.org
has an Independent faculty position. Fantastic place to set up your lab –great package: core funding, fantastic Ph.D. students, cutting edge core facilities & great colleagues. Closing date Sept 19th
embl.wd103.myworkdayjobs.com/en-US/EMBL/j...

30.07.2025 13:41 👍 192 🔁 225 💬 0 📌 9

I just got the notice that all the FlyBase people at Harvard, including me, will be laid off on October 12. I'm devastated.

11.08.2025 18:12 👍 378 🔁 223 💬 64 📌 50
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Blood taken from Danish babies ended up in huge genetic study—without consent The iPsych project, which investigates the genetics of psychiatric disorders, has sent 140,000 opt-out notices amid backlash

Last month, 140,000 Danes found out that their genetic data was being used in a massive research project-- without their consent.

I unpacked how this happened, and why it matters for @science.org

www.science.org/content/arti...

04.08.2025 15:57 👍 80 🔁 35 💬 2 📌 6

What do people use for references in Google docs/word? Coming from latex where referencing was solid, have been stung a couple of times by Google docs/zotero losing or messing up which paper each reference number points to. This is too painful to go through again. What are the alternatives?

31.07.2025 08:46 👍 2 🔁 2 💬 4 📌 1
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Rare k-mers reveal centromere haplogroups underlying human diversity and cancer translocations Centromeres are among the most diverse and dynamically evolving regions of the human genome and are commonly affected in various human cancers. However, organized into highly repetitive α-satellite hi...

🚨New preprint out!
🧬Short reads can now decode centromeres.
🌍We reveal population-scale centromere haplogroups and their links to disease.
biorxiv.org/content/10.1... (1/n)

30.07.2025 13:49 👍 3 🔁 6 💬 1 📌 0
Home - ProbGen 2026 Your Site Description

The 2026 Probabilistic Modeling in Genomics (ProbGen) meeting will be held at UC Berkeley, March 25-28, 2026. We have an amazing list of keynote speakers and session chairs:
probgen2026.github.io

Please help spread the news.

06.06.2025 17:52 👍 69 🔁 36 💬 2 📌 0

Five days without access to the HPC. What does one do? Wrong answers only pls
#bioinformatics
#hpc

21.07.2025 08:47 👍 1 🔁 0 💬 2 📌 0

I really like following how to build your own workflow, and then integrate to an existing workflow by adding neat features in #nextflow pipeline youtu.be/w3bOiBUdR_g

11.06.2025 10:34 👍 1 🔁 0 💬 0 📌 0
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ERDERA launches survey to put rare-disease patients at the heart of research - ERDERA ERDERA’s patient-engagement working group has opened an online survey to gauge how rare-disease patient organisations experience their role in publicly funded research, including projects financed und...

Really neat initiative: Assessing Needs and Expectations for Inclusive Development in Rare Disease Research. #RareDisease #PatientGroups can share their views on this form for the next 6 weeks: erdera.org/news/erdera-...

28.05.2025 06:38 👍 1 🔁 0 💬 0 📌 0