Ben Morehouse's Avatar

Ben Morehouse

@benmorehouse

Assistant Professor at UCIrvine. Biochemistry and structural biology enthusiast. Dabbling in innate immunity and microbiology. Phage defense, cyclic nucleotides, and cool enzymes. (he/him/his) https://faculty.sites.uci.edu/morehouselab/

283
Followers
271
Following
19
Posts
13.12.2023
Joined
Posts Following

Latest posts by Ben Morehouse @benmorehouse

Post image

After >10 years of our lab studying bacterial cGAS-like enzymes, @hobbslabutah.bsky.social finally reconstitutes viral sensing in vitro and discovers how these ancient receptors sense phage protease enzymes to detect virion assembly and activate antiviral immunity

www.biorxiv.org/content/10.6...

06.03.2026 09:00 πŸ‘ 46 πŸ” 20 πŸ’¬ 1 πŸ“Œ 0

Out today: We discovered new viral proteins that target immune signaling molecules, solely based on their AlphaFold-predicted shapes

www.science.org/doi/10.1126/...

Congrats Nitzan Tal and coauthors! Thank you Kranzusch lab for the fun collaboration!

Linking below previous thread on our findings

05.03.2026 19:28 πŸ‘ 95 πŸ” 44 πŸ’¬ 0 πŸ“Œ 5

CBASS is a cyclic nucleotide-based antiviral system in bacteria that is related to cGAS-STING signaling in animals. One of the big questions is how CBASS is activated during phage infection? We made some progress on this during my final year in the Kranzusch lab.
www.biorxiv.org/content/10.6...

06.03.2026 05:27 πŸ‘ 45 πŸ” 25 πŸ’¬ 3 πŸ“Œ 2
Preview
Benjamin Morehouse’s Ancient Immunity Breakthrough Targets Antimicrobial Resistance Dr. Benjamin Morehouse uncovers ancient immune protein SIRa1, a breakthrough that could combat antimicrobial resistance by targeting host immunity instead of pathogens.

Congratulations to Assistant Professor Benjamin Morehouse on receiving a $150,000 Michelson Prize from the Michelson Medical Research Foundation πŸ‘
The award supports his innovative immunology research at the Dunlop School.
Read more: bit.ly/4bmmJRK

03.03.2026 23:29 πŸ‘ 11 πŸ” 2 πŸ’¬ 1 πŸ“Œ 1
Preview
Structural insights into metallocluster trafficking in the nitrogenase assembly scaffold NifEN - Nature Catalysis Structural insights into the assembly of the complex nitrogenase cofactor are scarce. Now, cryo-EM and AlphaFold analyses of NifEN, which converts the precursor (L-cluster) to a mature cofactor (M-clu...

So excited to share our cryo-EM study of the nitrogenase cofactor assembly scaffold NifEN expressed in E. coli!
@ribbehulab.bsky.social @ucibiosci.bsky.social @natcatal.nature.com
www.nature.com/articles/s41...

03.03.2026 18:05 πŸ‘ 18 πŸ” 5 πŸ’¬ 1 πŸ“Œ 0

Cell death is a fundamental mechanism of antiviral immunity across diverse organisms, including bacteria. As my final PhD project with @jbdsf.bsky.social, I was curious whether cell death is required for successful immunity with the ancient cGAS pathway known as β€˜CBASS.’

Spoiler – the answer is no!

26.02.2026 16:25 πŸ‘ 36 πŸ” 14 πŸ’¬ 2 πŸ“Œ 2

πŸ₯³ πŸŽ‰ New preprint from the lab is out!

It's time to officially introduce the world to the Nucleolar Integrity and Stress Microprotein (NISM)!

Check out the preprint in the link below

23.02.2026 15:49 πŸ‘ 12 πŸ” 4 πŸ’¬ 0 πŸ“Œ 0

Somehow my mentor beat me to posting on this....thanks @kranzuschlab.bsky.social ! Very honored. And I agree- all very interesting projects from the awardees! Can't wait to see where all this new science takes us.

19.02.2026 03:56 πŸ‘ 0 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
Post image

Congratulations to Ben Morehouse @benmorehouse.bsky.social and the other 2026 Michelson Prize Awardees. All five newly funded projects are incredibly exciting areas of immunology!

www.michelsonmedicalresearch.org/news/michels...

18.02.2026 20:37 πŸ‘ 18 πŸ” 3 πŸ’¬ 1 πŸ“Œ 0

Lastly- this wouldn't have been possible without the incredible collab with @audeber.bsky.social and @enzopoirier.bsky.social and teams (shout out @hugovaysset.bsky.social) that got this whole thing started. Thank you for welcoming protein biochemists into your world.

19.02.2026 03:54 πŸ‘ 2 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0

We have a lot to do- but now we are better prepared to do it! I am especially proud of my team of grad and undergrad trainees pushing hard on this project and all the bacterial immunity projects as well.

19.02.2026 03:54 πŸ‘ 0 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
Preview
Michelson Medical Research Foundation Awards $750,000 to Rising Immunology Leaders Michelson Medical Research Foundation (MMRF) is proud to announce the eighth cohort of recipients of its 2026 Michelson Prizes: Next Generation Grants , naming five early-career scientists whos...

I am incredibly honored to receive this recognition from the Michelson Medical Research Foundation for our work on innate immune signaling.
www.michelsonmedicalresearch.org/news/michels...

19.02.2026 03:54 πŸ‘ 48 πŸ” 4 πŸ’¬ 3 πŸ“Œ 0
Post image

Congratulations to Sonomi Yamaguchi for her paper at @nature.com. Sonomi discovered Clover defense and explained how nucleotide signals control each step of viral sensing, immune regulation, and viral restriction – named for her beautiful "four-leaf" structures πŸ€

www.nature.com/articles/s41...

18.02.2026 17:11 πŸ‘ 59 πŸ” 31 πŸ’¬ 0 πŸ“Œ 4

The giant viruses surprised us at almost every turn of this project, but ultimately led us down a very rewarding path. Happy to share this work is now available online πŸ§ͺ

17.02.2026 17:07 πŸ‘ 48 πŸ” 23 πŸ’¬ 0 πŸ“Œ 0
Post image

A huge congratulations to Brenda Bass @bbass.bsky.social for her Lifetime Achievement Award from the RNA Society @rnasociety.bsky.social! She is being recognized for her "groundbreaking discovery of A-to-I editing and outstanding contributions to this field."

13.02.2026 13:48 πŸ‘ 29 πŸ” 6 πŸ’¬ 0 πŸ“Œ 1
Bacterial defense via RES-mediated NAD+ depletion is countered by phage phosphatases Many bacterial defense systems restrict phage infection by breaking the molecule NAD+ to its constituents, adenosine diphosphate ribose (ADPR) and nicotinamide (Nam). To counter NAD+ depletion-mediated defense, phages evolved NAD+ reconstitution pathway 1 (NARP1), which uses ADPR and Nam to rebuild NAD+. Here we report a bacterial defense system called aRES, involving RES-domain proteins that degrade NAD+ into Nam and ADPR-1β€³-phosphate (ADPR-1P). This molecule cannot serve as a substrate for NARP1, so that NAD+ depletion by aRES defends against phages even if they encode NARP1. We further discover that some phages evolved an extended NARP1 pathway capable of overcoming aRES defense. In these phages, the NARP1 operon also includes a specialized phosphatase, which dephosphorylates ADPR-1P to form ADPR, a substrate from which NARP1 then reconstitutes NAD+. Other phages encode inhibitors that directly bind aRES proteins and physically block their active sites. Our study describes new layers in the NAD+-centric arms race between bacteria and phages and highlights the centrality of the NAD+ pool in cellular battles between viruses and their hosts. ### Competing Interest Statement The authors have declared no competing interest. European Research Council, ERC-AdG GA 101018520 Israel Science Foundation, MAPATS grant 2720/22 Deutsche Forschungsgemeinschaft, SPP 2330, grant 464312965 Minerva Foundation with funding from the Federal German Ministry for Education and Research research grant from Magnus Konow in honor of his mother Olga Konow Rappaport Ministry of Aliyah and Immigrant Absorption, https://ror.org/05aycsg86 Clore Scholars Program

🧬 Metabolic arms race continues!
We discovered a new NAD⁺-depleting bacterial immune system aRES and phage enzymes that overcome it.
Our preprint is out: www.biorxiv.org/content/10.6...

29.01.2026 11:20 πŸ‘ 29 πŸ” 17 πŸ’¬ 1 πŸ“Œ 5
Post image

Hello world! I am excited to announce my lab is open at the University of Utah in the Department of Biochemistry. We are looking for scientists at all levels interested in studying host-virus interactions in both bacteria and animals. Come join us in beautiful Utah! (photo is 10 steps from lab)

22.01.2026 22:06 πŸ‘ 74 πŸ” 31 πŸ’¬ 6 πŸ“Œ 0
Post image

Excited to help share that Sam Hobbs @hobbslabutah.bsky.social from our group has launched his independent lab at the University of Utah studying host-virus interactions. Congratulations Sam, we can't wait to see the new discoveries your lab will make!

hobbs.biochem.utah.edu

22.01.2026 17:43 πŸ‘ 25 πŸ” 2 πŸ’¬ 0 πŸ“Œ 1
Post image

We are seeking a motivated postdoctoral fellow to investigate mechanisms of DNA damage response, APOBEC-mediated mutagenesis, innate immunity, and double-stranded RNA sensing. Located in Southern California, UCI offers an outstanding scientific environment and exceptional quality of life.

21.01.2026 03:50 πŸ‘ 7 πŸ” 11 πŸ’¬ 0 πŸ“Œ 0
Preview
Rhinovirus triggers distinct host responses through differential engagement of epithelial innate immune signaling Rhinoviruses are the most frequent cause of common colds and also a major cause of respiratory distress in high-risk groups. Using single-cell sequencing of rhinovirus-infected nasal epithelial organo...

Rhinoviruses cause common cold & asthma attacks but are also often benign. Using nasal organoids, we learned how the community of cells in the lining the nasal passages coordinates to respond to rhinovirus and which responses lead to excess mucus & inflammation. www.cell.com/cell-press-b...

20.01.2026 21:23 πŸ‘ 20 πŸ” 10 πŸ’¬ 1 πŸ“Œ 1
Preview
A phage protein screen identifies triggers of the bacterial innate immune system - Nature Microbiology A library of 400 phage protein-coding genes is used to find a trove of antiphage systems, revealing systems that target tail fibre and major capsid proteins.

I’m thrilled to share our work on phage triggers of the bacterial immune system in its final form @natmicrobiol.nature.com www.nature.com/articles/s41...

18.01.2026 22:45 πŸ‘ 106 πŸ” 50 πŸ’¬ 2 πŸ“Œ 0
A methylome-derived m6-dAMP trigger assembles a PUA-Cal-HAD immune filament that depletes dNTPs to abort phage infection Bacteria must distinguish phage attack from normal homeostatic processes, yet the danger signals that trigger many defence systems remain unknown. Here, we show that a PUA-Calcineurin-CE-HAD module from Escherichia coli ECOR28 confers broad anti-phage protection by binding Dam-methylated deoxyadenosine monophosphate (m6-dAMP) generated during phage-induced chromosome degradation. Ligand binding converts a preassembled PUA-Calcineurin-CE hexamer loaded with six HAD phosphatases into a polymerising filament. The filament acts as a high-flux dNTP sink through a two-enzyme cascade: HAD first dephosphorylates dATP to dADP, and Calcineurin-CE then converts dADP to dAMP. dNTP collapse halts phage replication and enforces abortive infection. Multiple mobile-element DNA mimic proteins block filament assembly, revealing a direct phage counter-defence. More broadly, our findings extend a conserved, cross-kingdom paradigm of immune filament assembly to nucleotide-depletion antiviral defence and suggest modified-nucleotide sensing by related PUA-Calcineurin-CE modules as a widespread, underappreciated bacterial strategy. ### Competing Interest Statement The authors have declared no competing interest. NIHR Southampton Biomedical Research Centre, https://ror.org/01qqpzg67, Postdoctoral Bridging Fellowship F.L.N. is supported by a Wessex Health Partners (WHP) and National Institute for Health and Care Research Wessex Experimental Medicine Network (NIHR WEMN), Seed fund National Institutes of Health, GM145888, U24 GM129539) Maloris Foundation Memorial Sloan Kettering Cancer Center, P30-CA008748 Simons Foundation, SF349247 New York State Assembly

Preprint out: We characterise PUA-Cal-HAD, a widespread bacterial antiphage defence family. An infection cue switches a preassembled complex into an immune filament that drains dNTPs via a coupled two-enzyme cascade, and phage DNA mimics can block filament assembly (anti-polymerisation).

17.01.2026 14:52 πŸ‘ 34 πŸ” 19 πŸ’¬ 1 πŸ“Œ 0
Preview
Systematic discovery of TIR-based immune signaling systems in bacteria Toll/interleukin-1 receptor (TIR) domains are important for immune signaling across humans, plants and bacteria. These domains were recently found to produce immune signaling molecules in plant immuni...

I’m happy to share our new preprint! We uncovered the full diversity of bacterial TIR-based antiviral immune signaling, massively expanded the known diversity of Thoeris systems, and revealed conservation of TIR-derived immune signals across the tree of life.

www.biorxiv.org/content/10.6...

04.12.2025 09:24 πŸ‘ 74 πŸ” 29 πŸ’¬ 2 πŸ“Œ 7
Post image Post image

πŸ§¬πŸ›‘οΈHow are new immune mechanisms created?

We show how Lamassu antiphage system, originated from a DNA-repair complex and evolved into a compact and modular immune machine, wt Dinshaw Patel lab in @pnas.org.
πŸ‘ @matthieu-haudiquet.bsky.social, Arpita Chakravarti & all authors!

doi.org/10.1073/pnas...

27.11.2025 09:35 πŸ‘ 104 πŸ” 47 πŸ’¬ 1 πŸ“Œ 2
Post image

What is the best strategy to win any contest?

Eliminate your opponents of course.

Recently, my friend @fernpizza.bsky.social showed how plasmids compete intracellularly (check out his paper published in Science today!). With @baym.lol, we now know they can fight.

www.biorxiv.org/content/10.1...

20.11.2025 22:11 πŸ‘ 79 πŸ” 42 πŸ’¬ 3 πŸ“Œ 6
Preview
Filament formation and NAD processing by noncanonical human FAM118 sirtuins Nature Structural & Molecular Biology - Baretić and Missoury et al. identify vertebrate proteins FAM118B and FAM118A as sirtuins similar to bacterial antiphage enzymes and show that...

Very happy to share our collaborative project on FAM118 proteins - noncanonical sirtuins that form filaments and process NAD in human and other vertebrate cells.

17.11.2025 11:37 πŸ‘ 75 πŸ” 32 πŸ’¬ 2 πŸ“Œ 4
Preview
A human homolog of SIR2 antiphage proteins mediates immunity via the Toll-like receptor pathway Key actors of mammalian immunity originated from bacterial antiphage systems. The full extent of immune system conservation between bacteria and eukaryotes is unknown. Here, we show that the silent in...

I'd also like to highlight a recent publication by @audeber.bsky.social, @enzopoirier.bsky.social, and colleagues showing FAM118B, which they term "SIRal", is essential for innate immune response in mammalian cellular models; they also have great phylogenetic analysis and insights into biochemistry.

17.11.2025 14:16 πŸ‘ 2 πŸ” 3 πŸ’¬ 1 πŸ“Œ 0
Preview
Proteome-wide in silico screening for human protein-protein interactions Protein-protein interactions (PPIs) drive virtually all biological processes, yet most PPIs have not been identified and even more remain structurally unresolved. We developed a two-step computational...

Thrilled to share that the final piece of my PhD work is now on bioRxiv! biorxiv.org/content/10.1... With support from @nvidia and the @NSF, we used AlphaFold to screen 1.6M+ protein pairs, revealing thousands of potential novel PPIs. All data can be viewed at predictomes.org/hp

12.11.2025 21:26 πŸ‘ 163 πŸ” 67 πŸ’¬ 5 πŸ“Œ 4
Post image

Bacteria can sense when a virus starts shredding their genome β€” by detecting methylated mononucleotides.
Here’s the story of how we discovered the Metis defense system πŸ‘‡
www.biorxiv.org/content/10.1...

06.11.2025 04:59 πŸ‘ 132 πŸ” 49 πŸ’¬ 4 πŸ“Œ 12

Preprint: Bacteria sense virus-induced genome degradation via methylated mononucleotides

tinyurl.com/ch3damp

We show how molecular byproducts released during virus-induced cell exploitation are used as signals to trigger host immunity

Revealed by the amazing Ilya Osterman. See his thread belowπŸ‘‡

06.11.2025 10:39 πŸ‘ 61 πŸ” 19 πŸ’¬ 0 πŸ“Œ 1