Super excited to present our poster (rayanirban.github.io/files/EMBL_p...) on HazeMatching and ResMatching at the EMBL AI and Biology Symposium 2026 in Heidelberg, Germany, this week. 🎉
If you’re around, please drop by our poster (#148 on Thursday, 12/3)! 😊
@embl.org #EESAIBio #AI4Science
🚨 Alarm!!! 🚨
AI/ML course for microscopy image analysis!!! 🧐
In 2026 at Janelia (@hhmijanelia.bsky.social), no tuition, housing and meals provided! Isn’t that borderline unbelievable?!?
20 students, ~14 TAs and lecturers
🗓️ June 4-18 2026
✍️ Jan 15 2026 ✍️
🔁 pls!!
www.janelia.org/you-janelia/...
🛑 ⚠️ Registration Deadline: December 12th! ⚠️
Don’t miss your chance to join! 🔬👷♀️🛠️
You'll need a Motivation Letter, CV, and a Reference Letter 📝
👉 Course details & registration: meetings.embo.org/event/26-mic...
#Microscopy #OpenScience #Bioimaging #EMBOmicroscope
Applications for the next @royalmicrosoc.bsky.social “Introduction to image analysis” workshop are now open!
Join us for 3 days in Cardiff in May to learn the foundations of #bioimageanalysis using Fiji, Python and @napari.org
www.rms.org.uk/rms-event-ca...
We just released a new major version of TrackMate (v8), the cell and organelle tracking plugin of Fiji.
It ships many new features, detailed below, but that are articulated around the following:
🦠🔬🤖🧑💻 #mAIcrobe is out! With @pinholab.bsky.social's lab, we launched an open-source framework for high-throughput bacterial image analysis. By rockstars A. Brito & B. Saraiva et al, making #DeepLearning for phenotyping accessible! Easy to use, plus model training
📜 www.biorxiv.org/content/10.1...
Cool collaborations on light sheet microscopy @huiskenlab.bsky.social, cellular barcoding @mgrillo.bsky.social, AI-based cell tracking @jytinevez.bsky.social, and citizen science through video game for cell tracking @rebelpixel.fr
see www.averof-lab.org/pages/tracman
3/3
Here it is! Postdoctoral position to identify the progenitors sensory organs in the regenerating legs of Parhyale
apply here: www.averof-lab.org/pages/tracman
1/3
Job alert!! 👀
BioImage analysis friends - King's are recruiting for a full-time, permanent facility position! Come and work with fun microscopes and fun people (and me!) - please share! www.kcl.ac.uk/jobs/126345-...
FlyBase needs your help! We ask that European labs continue to contribute to Cambridge, UK FlyBase, whereas US and other non-European labs can contribute to US FlyBase. For more information and how to donate: wiki.flybase.org/wiki/FlyBase...
Our beautiful Hydra made the cover!!! 😍😍😍
An experiment performed by Pavel Mejstrik with a HCR protocol by @giuliaserafini.bsky.social, @paveltomancak.bsky.social lab @mpi-cbg.de
Actin fibers in blue, nuclei in orange.
I just got the notice that all the FlyBase people at Harvard, including me, will be laid off on October 12. I'm devastated.
A fantastic opportunity! Please repost :) #Lightsheet #Microscopy #BioImage #ImageAnalysis
🚨 Deadline extended!
You now have until August 8 to apply for the Light-Sheet Image Analysis Workshop (Jan 5–9, 2026) at Universidad Mayor in Santiago de Chile with the support of CZI @cziscience.bsky.social and @lisium-chile.bsky.social
1/3
The 2nd AI4Life Challenge is live!
Calling the AI & bioimaging community to tackle a key microscopy challenge: removing noise while preserving detail.
📦 Paired noisy/clean datasets
📈 Ground-truth evaluation
🧠 DL focus
Build, test, compete 👉 ai4life.eurobioimaging.eu/challenge-2/
3rd challenge from AI4Life! We're inviting the community to design unsupervised models that preserve spatial & temporal patterns in neuronal data.
📅 Open till Aug 11, 2025
🚀 Join now: ai4life.eurobioimaging.eu/challenge-3/
🚨 #ExM meets #eSRRF 🔬🏄🌊 the full protocol now in @natprot.nature.com: doi.org/10.1038/s415...
It's here! ✨
The #ExSRRF protocol paper is out 😍. Full details for merging Expansion Microscopy with our eSRRF analysis. From cells to tissue. A partnership with @puellesv.bsky.social's lab. Lead by Dominik Kylies and @hannah-superres.bsky.social + colleagues. #ExM #eSRRF
➡️ Open link: rdcu.be/euvEw
🔬👨💻📰 #SReD is out!
Automated structural detection for #ImageJ & #FIJI, from nano to macro ✨🐘. No training data, no bias - texture analysis with GPU acceleration!⚡️
Brainchild of @afonsomendes92.bsky.social and adventure w @christlet.bsky.social lab + friends.
Check: www.nature.com/articles/s41...
Fellowship pportunity:
Are you interested in technology and method development, in a core facility or infrastructure?
ARISE2, an MSCA action, might be for you.
You could, e.g., start working with Christian Tischer at EMBL and do a visit with us.
Please reach out.
www.embl.org/training/ari...
🧑🔬📰🚀 #RxivMaker is here! A framework automating the creation of publication-ready scientific #preprints from simple Markdown. Goodbye manual formatting, and hello gorgeous manuscripts! A great adventure with @guijacquemet.bsky.social's lab
📜: zenodo.org/records/1575...
👨💻: github.com/HenriquesLab...
Join us for the next #DGZ Focus Workshop on a topic you MUST be interested in: #Imaging in Cell Biology, organized by @pfeffercryolab.bsky.social and @ewerslab.bsky.social - Tuesday, June 24, noon, Zoom 🔬👀✨
Come all, this will be great!
Apparently existing foreign students at Harvard *MUST* transfer according to the Trump administration.
My Harvard neuroscience/connectomics peeps: If this impacts any of you (faculty/students), get in touch with me and we can chat about how I can help you.
🚨 📣 Registration for #CBIAS2025 is now open!
24-25th November at the Wellcome Collection, special early bird registration rate until 20th July
www.crick.ac.uk/whats-on/cri...
Curious about aging & longevity research? Join us at GIMM Fest (Lisbon, Portugal)
Discover groundbreaking insights & engage with top researchers. It's a celebration of curiosity & a catalyst for change.
🗓️ Sept 4-5: Scientific Sessions + Sept 6: Public Event
👉 gimm.pt/gimm-festival/
Monday is the big day! Very much looking forward to welcoming all participants and speakers of the Neurogenomics Conference to @humantechnopole.bsky.social in Milan. It promises to be an exciting few days filled with amazing science.
Big step for open science! 🎉 Our @eu-openscreen.bsky.social consortium drops their first open Cell Painting dataset.
Wolff et al. 2025: doi.org/10.1016/j.is...
FAIR, high-quality & ready to power AI in drug discovery. 100K+ compounds coming in 2025!
#OpenData #CellPainting #DrugDiscovery
Get to know more about her research at the @champalimaudf.bsky.social 👇https://www.fchampalimaud.org/news/champalimaud-foundation-investigator-receives-easo-novo-nordisk-foundation-new-investigator
