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Fernanda Ribeiro

@felenitaribeiro

πŸ‡§πŸ‡· πŸ‡¦πŸ‡Ί Marie Curie Fellow at JLU Giessen πŸ‡©πŸ‡ͺ | Vision | Neuroscience | Deep learning Views are my own.

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20.05.2024
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Latest posts by Fernanda Ribeiro @felenitaribeiro

Finally out in eLife!!
"Early foveal cortex predicts the features of saccade targets through feedback from higher cortical areas."
elifesciences.org/articles/107...

26.01.2026 14:20 πŸ‘ 30 πŸ” 11 πŸ’¬ 0 πŸ“Œ 0
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10 PhD positions at JLU Giessen in the new Research Training Group "PIMON"! We will explore how humans perceive and interact with materials and objects in natural environments.
More information on the project, the PIs, and how to apply here:
www.uni-giessen.de/de/ueber-uns...
Please share!

26.02.2026 09:29 πŸ‘ 32 πŸ” 19 πŸ’¬ 1 πŸ“Œ 1

🧨 Preprint alert
Is it easier to find a ball than a shoe? The answer lies in how variable we think these objects are in the real-world. www.biorxiv.org/content/10.6...

w/ the amazing @dkaiserlab.bsky.social & @luchunyeh.bsky.social πŸ¦„

🧡1/8

09.02.2026 10:26 πŸ‘ 20 πŸ” 8 πŸ’¬ 1 πŸ“Œ 2
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Visual language models show widespread visual deficits on neuropsychological tests - Nature Machine Intelligence Tangtartharakul and Storrs use standardized neuropsychological tests to compare human visual abilities with those of visual language models (VLMs). They report that while VLMs excel in high-level obje...

Our latest paper, β€œVisual language models show widespread visual deficits on neuropsychological tests”, is now out in Nature Machine Intelligence: www.nature.com/articles/s42...

Non-paywalled version:
arxiv.org/abs/2504.10786

Tweet thread below from first author @genetang.bsky.social...

09.02.2026 02:40 πŸ‘ 70 πŸ” 36 πŸ’¬ 1 πŸ“Œ 2

πŸ“’Maths in the Brain Workshop 2026 in Melbourne.

We will bring together researchers across Australia with a shared interest in understanding the brain from a quantitative perspective.

This year's keynote is delivered by Professor James Cole, University College London.

1/4🧡

02.02.2026 04:57 πŸ‘ 20 πŸ” 10 πŸ’¬ 2 πŸ“Œ 3
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🚨 New paper out in Science Advances 🚨
With @suryagayet.bsky.social and @peelen.bsky.social, in two fMRI studies we investigate mental object rotations that are driven by the scene context, rather than purely by cognitive operations. 🧡 www.science.org/doi/10.1126/...

23.01.2026 15:15 πŸ‘ 56 πŸ” 18 πŸ’¬ 2 πŸ“Œ 1
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List of members who support the SIG renewal List of members who support the SIG renewal Please provide the list of at least 12 OHBM members in good standing who support the SIG renewal and are willing to engage in the SIG activity. Name Email...

The OHBM OSSIG has been operating since 2016, hosting and promoting open science education for the OHBM community and beyond. SIGs must be renewed every 5 years. Please sign the following petition by Mon, Jan 26 to help us continue operating. Thank you!
docs.google.com/document/d/1...

19.01.2026 20:35 πŸ‘ 5 πŸ” 5 πŸ’¬ 0 πŸ“Œ 1

The ARC’s processes are back to being farcical, @jasonclaremp.bsky.social

You advocated for a streamlined, efficient, faster ARC, but all that progress has been undone.

How can they claim to fund β€œinnovation” with more than a year between initial proposal & outcomes? It should be 6 months, not 16!

12.01.2026 01:34 πŸ‘ 34 πŸ” 22 πŸ’¬ 0 πŸ“Œ 2
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Renauld et al. present scilpy, an open-source #Python library for diffusion magnetic resonance imaging and tractography: doi.org/10.52294/001...

@ohbmofficial.bsky.social

08.01.2026 20:21 πŸ‘ 25 πŸ” 10 πŸ’¬ 0 πŸ“Œ 1
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This is your brain on Ritalin. Got your attention? Stimulant medications like Ritalin (methylphenidate) do, but not in the way you might think. They don't act directly on the brain’s attention systems! Find out what's really happening in @cellpress.bsky.social. doi.org/10.1016/j.ce...

24.12.2025 16:45 πŸ‘ 267 πŸ” 91 πŸ’¬ 16 πŸ“Œ 22
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🧠New preprint!

What if cortical geometry alone already encodes much of white-matter organization?

We introduce a subject-specific, reversible cortical folding model that unfolds and refolds the brain from a single T1w MRI; no diffusion, no ML.

www.biorxiv.org/content/10.6...

17.12.2025 01:48 πŸ‘ 34 πŸ” 11 πŸ’¬ 2 πŸ“Œ 1
BOLD signal changes can oppose oxygen metabolism across the human cortex, Nature Neuroscience

BOLD signal changes can oppose oxygen metabolism across the human cortex, Nature Neuroscience

fMRI signals β€œup,” but neural metabolism might be going β€œdown.”

In our @natneuro.nature.com paper, we demonstrate that about 40% of voxels with robust BOLD responses exhibit opposite oxygen metabolism, revealing two distinct hemodynamic modes.

rdcu.be/eUPO8
funds @erc.europa.eu
#neuroskyence 🧡:

16.12.2025 15:43 πŸ‘ 176 πŸ” 80 πŸ’¬ 4 πŸ“Œ 8
Monash University - Sign In Sign in with your account to access PageUp

Exciting announcement!

Our Institute is calling for applications for a EMCR 2-year fellowship .

Come and join a great team @turnerinstitute!

Details here:
careers.pageuppeople.com/513/ci/en/jo...

14.12.2025 21:45 πŸ‘ 12 πŸ” 9 πŸ’¬ 0 πŸ“Œ 0
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Thanks @insidehighered.com for publishing our OpEd w Annie K. Lamar #publicvoices of The Oped Project @ucsantabarbara.bsky.social !

πŸ€–Open source software & infra accelerates scientific discoveries by removing financial & technical barriers.

It's about time we start treating it as a public goodπŸ‘‡

12.12.2025 17:52 πŸ‘ 17 πŸ” 6 πŸ’¬ 1 πŸ“Œ 1
OSF

New preprint w/ Malin Styrnal & @martinhebart.bsky.social

Have you ever computed noise ceilings to understand how well a model performs? We wrote a clarifying note on a subtle and common misapplication that can make models appear quite a lot better than they are.

osf.io/preprints/ps...

04.12.2025 18:53 πŸ‘ 60 πŸ” 23 πŸ’¬ 1 πŸ“Œ 4
Top-down and bottom-up neuroscience as collections of practices - Nature Reviews Neuroscience Nature Reviews Neuroscience - Top-down and bottom-up neuroscience as collections of practices

New Correspondence with @davidpoeppel.bsky.social in Nat Rev Neurosci. www.nature.com/articles/s41...

Here, we critique a recent paper by Rosas et al. We argue that "Bottom-up" and "Top-down" neuroscience have various meanings in the literature.

PDF: rdcu.be/eSKYI

02.12.2025 15:13 πŸ‘ 41 πŸ” 15 πŸ’¬ 1 πŸ“Œ 1

Not sure. If there are differences in anatomy, I think we could capture potential differences in retinotopic organisation. However, there could also be differences in retinotopic organisation that are not fully captured by cortical shape, as in albinos (www.med.ovgu.de/augenklinik/...).

02.12.2025 14:55 πŸ‘ 1 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

Really excited to see this preprint out! Fernanda did an amazing job at demonstrating how you can accurately predict retinotopy from T1w scans alone. This is important for several reasons: 1/4

01.12.2025 13:51 πŸ‘ 18 πŸ” 4 πŸ’¬ 1 πŸ“Œ 0

@martinhebart.bsky.social @sbollmann.bsky.social forgot to tag you πŸ˜…

01.12.2025 12:31 πŸ‘ 3 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

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Thanks to all co-authors for help with the data, code, and feedback! Special thanks to Martin and Steffen for the mentorship and knowledge! I have learned a great deal in the past three years with these two and hope we can continue to expand this work together.

01.12.2025 11:26 πŸ‘ 1 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
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GitHub - felenitaribeiro/deepRetinotopy_TheToolbox: DeepRetinotopy - General toolbox for predicting human retinotopic maps DeepRetinotopy - General toolbox for predicting human retinotopic maps - felenitaribeiro/deepRetinotopy_TheToolbox

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πŸ› οΈ Toolbox: github.com/felenitaribe... (software containers + available on Neurodesk)

πŸ“„ Preprint: tinyurl.com/deepretinotopy

01.12.2025 11:26 πŸ‘ 1 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0

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Beyond retinotopy, this work establishes a general framework for leveraging structure-function relationships to predict topographic organization in other parts of the brain.

01.12.2025 11:26 πŸ‘ 0 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0

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Altogether, our approach offers a standardized framework for both cross-study and cross-individual comparisons, as our methodology is invariant to magnetic field strength, scanner, and acquisition site.

01.12.2025 11:26 πŸ‘ 1 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
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Guess what? We were able to detect these expected age-related differences, suggesting that they can emerge from changes in local cortical geometry!

01.12.2025 11:26 πŸ‘ 1 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
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We hypothesized that if age-related differences in how the primary visual cortex represents the visual field emerge from changes in local cortical geometry, deepRetinotopy should detect them.

01.12.2025 11:26 πŸ‘ 0 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0

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We retrospectively applied deepRetinotopy to 11,060 anatomical brain scans (ABCD and HCP datasets) to uncover age-related variations in visual field representations.

01.12.2025 11:26 πŸ‘ 0 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0

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Finally, we demonstrate how deepRetinotopy toolbox enables discoveries at a population scale by providing new insights into the structure-function coupling of the visual cortex.

01.12.2025 11:26 πŸ‘ 0 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
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We also demonstrate how our toolbox can be integrated with a Bayesian model of retinotopy to derive individual-level boundaries of the early visual areas.

01.12.2025 11:26 πŸ‘ 0 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
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We benchmark and comprehensively assess the generalizability of our approach using multiple publicly available fMRI datasets acquired under diverse experimental conditions, including varying imaging sites, scanner types, and visual stimuli protocols used for retinotopic mapping.

01.12.2025 11:26 πŸ‘ 0 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0

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In contrast to our previous proof-of-concept work, deepRetinotopy toolbox requires only a T1w image, making it readily applicable to historical datasets. It also provides an easy-to-use command-line interface that is compatible with common neuroimaging pipelines and BIDS.

01.12.2025 11:26 πŸ‘ 1 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0