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06.11.2025 00:15
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Thank you for sharing!!
here Leslie and I celebrating first via Zoom with @rongfan8.bsky.social and Di, together with our Molneuro Unit and coauthors as @peruhlen.bsky.social , and then at dinner with the lab
Many congrats to everyone in this big team project!!!
Great pleasure working together in this project ! Truly proud of this work! 🥰
Our latest collaboration with @rongfan8.bsky.social, spatial triomics to investigate myelin and cortical brain development, and demyelination, spearheaded by Leslie Kirby in our lab @ki.se and Di Zhang in Rong's lab! Check it out @nature.com
www.nature.com/articles/s41...
And now for our final speaker of #BICC2025: Rong Fan (@rongfan8.bsky.social) from @yale.edu who will be telling us about his spatial multi-omics work in lymphoma
Great to catch up with @rongfan8.bsky.social in Marseille, where we both end up for two completely unrelated conferences!
Join us at the FENS Single-Cell & Spatial Omics Winter School with:
@sarabiz86.bsky.social
@rongfan8.bsky.social
@gokcegroup.bsky.social
@gioelelamanno.bsky.social
@sj-marzi.bsky.social
@jplopez-atalaya.bsky.social
Ana Falcão
Florian Rosenberger
Gabriel Baró
Bosiljka Tasic
Barbara Treutlein
Looking forward to the FENS neuroscience winter school in Jan 2026! 🤩🥳🤩
This stunning science art comes from a lymphoma case diagnosed by my incredible friend, hematopathology director Mina Xu. Art inspired by science brings awareness and hope, and helps patients.
💕💕💕
Feeling truly privileged to work with my amazing colleagues Mina Xu and Coraline Mlynarczyk in this project. Thank you!
We are incredibly grateful to Mark Foundation and Follicular Lymphoma Foundation for the ASPIRE award, supporting our research on decoding human follicular lymphoma progression and transformation.
I was unable to attend the YCC Annual Awards Ceremony this year due to urgent personal matters. When I heard the news, I was completely surprised and genuinely moved! Truly thankful to Yale Cancer Center for this recognition and the entire lab for their devotion to science! 🥰
I am incredibly honored and deeply grateful for receiving the 2024 YCC Translational Cancer Research Award! Thank you Yale Cancer Center from the bottom of my heart for this recognition and for your continued support! 💕
medicine.yale.edu/news-article...
@juliandownward.bsky.social @yuvalshaked.bsky.social @netaerez.bsky.social @idoamitlab.bsky.social @tcell.bsky.social @landau.bsky.social @zronai.bsky.social
Fabulous group photos from our recent conference in Athens !🎉 #MICC2025 Please feel free to share and tag :)
@peeperlab.bsky.social @yardenasamuels.bsky.social @leeat-keren.bsky.social @rongfan8.bsky.social @shouval.bsky.social @yogogurt.bsky.social @eriksahailab.bsky.social
ASTRO
Automated Spatial Whole-Transcriptome RNA-Expression wOrkflow
for Patho-DBiT
#SpatialRNAEncyclopedia
coding + noncoding RNAs
github.com/gersteinlab/...
vs ST-pipeline
Establishment of a non-coding RNA reference😎
@rongfan8.bsky.social bioRxiv 2025
www.biorxiv.org/content/10.1...
#SpatialRNAEncyclopedia
Patho-DBiT
#SpatialTranscriptomics FFPE
Spatial Co-mapping of RNA Expression Splicing Editing SNV AND ncRNAs (miRNA lncRNA rRNA snRNA)👹
in situ polyA tailing
10 μm/px➡️ >2000 genes Lymphoma
@rongfan8.bsky.social @cellcellpress.bsky.social 2025
www.cell.com/cell/fulltex...
Connecting gene activity & precise location of protein function by Deterministic Barcoding in Tissue sequencing (DBiTplus)
📷: Archibald Enninful, Zhaojun Zhang et al
Mina Xu, Zongming Ma @rongfan8.bsky.social
@yale.edu in @biorxivpreprint.bsky.social
➡️: bpod.org.uk/archive/2025... &
AntDLewis
Just picked up the beautiful offprint of our Patho-DBiT paper that was on the cover of Cell, highlighting its power to spatially explore molecular biology in human FFPE tissues 🤩🤩 . Congratulations to my phenomenal postdoc Zhiliang Bai and all amazing collaborators!!
Congrats Dr.Zhang for your postdoctoral travel award! Way to go with spatial transcriptomics! #cmbe2025 @rongfan8.bsky.social @yalebooks.bsky.social @yaleengineering.bsky.social
truly honored to write a commentary piece to discuss spatial protein profiling in the context of multi-omics !
www.nature.com/articles/s41...
SPATIAL PROTEOMICS is the Method of the Year 2024!!! 🤩🤩🤩
www.nature.com/articles/s41...
Incredible #epigenetics conference organized by @mpi-ie.bsky.social and a wonderful community!!!
The second preprint presents an experiment workflow and a broadly applicable computional framework to integrate sequencing-based and imaging-based spatial omics data for the SAME tissue slide to construct a single cell spatial omics atlas.
www.biorxiv.org/content/10.1...
The first preprint reports on an all optical approach to map metabolic activities and high-plex immunofluorescence cell typing in the SAME tissue section to link single cell omics to metabolic function cell-by-cell directly in complex tissues 🤩🤩
www.biorxiv.org/content/10.1...
My first post here on our research 🥳. Two preprints from my lab at Yale and Dr. Lingyan Shi’s lab at UCSD report same tissue section multi-modal spatial omics mapping! Please check them out. 🤩
Spatial Multi-Omics for Cancer Systems Biology Workshop! It is organized by our NCI-funded cancer systems biology center. We will highlight talks by the leaders in the field as well as some hands-on experiences in computational analysis of spatial multi omics data!
isbscience.org/spatial-mult...