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Caitie McCafferty

@computingcaitie

Postdoc in the @cellarchlab.com at the @biozentrum.unibas.ch. Find out more at ciliagirl.com.

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10.11.2024
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Latest posts by Caitie McCafferty @computingcaitie

Final version @nature.com of our paper describing unconventional multicellular development in a choanoflagellate inhabiting an extreme environment. A ton of new data since the first @biorxivpreprint.bsky.social preprint (which we've kept updating).

A brief 🧡 (carried over from the old place)

28.02.2026 08:12 πŸ‘ 339 πŸ” 137 πŸ’¬ 16 πŸ“Œ 16

Nice collab w my neighbor in Basel @abimoye.bsky.social on SAXO6 mol bio and genetics!!

25.02.2026 14:21 πŸ‘ 1 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

Thrilled to share that our paper on a novel IRD gene has been published in The American Journal of Human Genetics (AJHG)! πŸŽ‰ This wouldn’t have been possible without the incredible group of colleagues and collaborators. Special thanks to @computingcaitie.bsky.social, Ditta Zobor, and ERDC members!

24.02.2026 15:59 πŸ‘ 7 πŸ” 3 πŸ’¬ 0 πŸ“Œ 0

πŸ“πŸ”¬In collaboration with @computingcaitie.bsky.social and @cellarchlab.com, SAXO6 localization was mapped along ciliary microtubules with direct links to Ξ±-tubulin, linking this structural protein class to human retinal disease for the first time.
πŸ‘‰ @ajhgnews.bsky.social
#Ophthalmology

24.02.2026 15:53 πŸ‘ 5 πŸ” 2 πŸ’¬ 1 πŸ“Œ 1
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Long in the making, but happy to present the Chlamydomonas chlororibosome!
Cryo-ETπŸ”¬reveals a large new domain on the small subunit, built from multiple extensions in conserved ribosomal proteins.
bioRxiv πŸ“–: shorturl.at/q44tG
This suggests greater chlororibosome diversity than expected!
1/n 🧡

10.02.2026 08:35 πŸ‘ 154 πŸ” 54 πŸ’¬ 4 πŸ“Œ 6

Very happy to say that our work on how axonemes are generated is now available on bioRxiv: www.biorxiv.org/content/10.6... - if you’ve ever wondered how the incredibly beautiful, complex structures within motile #cilia are constructed then this is for you!

06.02.2026 11:20 πŸ‘ 84 πŸ” 29 πŸ’¬ 8 πŸ“Œ 3

Congrats Helen!! Really cool story

08.02.2026 14:18 πŸ‘ 0 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
Hot Topic Conference Support for an "Eduard Strasburger Hot Topic Conference" for DBG's members

For #ECR’s:

DBG’s Hot Tpoic Workshop
on Cryo-Electron Tomography + FIB-milling

13 – 15 April 2026
In @cellarchlab.com 's lab @biozentrum.unibas.ch

Organised by @tamb-o.bsky.social, Karen Zinzius, @fannyleblanc.bsky.social

Details: www.deutsche-botanische-gesellschaft.de/en/about-us/...

03.02.2026 17:24 πŸ‘ 11 πŸ” 8 πŸ’¬ 0 πŸ“Œ 1

You like #LLPS? #TeamTomo? #Rubisco? Check out our latest preprint!

What a great collaboration this has been!

30.01.2026 15:38 πŸ‘ 30 πŸ” 11 πŸ’¬ 0 πŸ“Œ 0
Preview
A protein complex in the extreme distal tip of vertebrate motile cilia controls their organization, length, and function - Nature Communications Here they combine in vivo imaging with proteomics to characterize a protein complex comprised of Ccdc78 and Ccdc33 that acts at the extreme distal tip of 9 + 2 motile cilia to control tip architecture...

Cilia alert! Stoked to have the new paper from Juyeon Hong about a new domain at the extreme distal tip of motile cilia! (The EDT, y'all!) It's out now @natcomms.nature.com.
Check it out!
#cilia

www.nature.com/articles/s41...

29.01.2026 01:23 πŸ‘ 64 πŸ” 20 πŸ’¬ 1 πŸ“Œ 0

πŸ”¬πŸš¨New preprint alert! πŸš¨πŸ”¬

We developed quantitative expansion microscopy (qExM) - a method to accurately count proteins in situ by combining expansion microscopy's improved labeling with statistical estimators borrowed from ecology

www.biorxiv.org/content/10.6...

#SuperResolution #CellBiology

20.01.2026 16:12 πŸ‘ 44 πŸ” 18 πŸ’¬ 5 πŸ“Œ 1
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Our research scientist NΓΊria Ros-Rocher won the 1st prize @zeiss-microscopy.bsky.social microscopy contest with this beautiful choano colony www.zeiss.fr/microscopie/... πŸ₯³

C. flexa might not yet be a genetic model, but it is now at least a calendar model, which counts for something. I think.

12.01.2026 19:28 πŸ‘ 116 πŸ” 18 πŸ’¬ 4 πŸ“Œ 0

This one was quite the journey! The paper describing the #ChlamyDataset is finally out and on the cover of Mol Cell!

This beautiful rendering made by co-author @jessheebner.bsky.social and Holly Peterson shows an instance of mitochondrial fission found in the dataset 😍

[Maybe long thread ahead]

09.01.2026 19:14 πŸ‘ 92 πŸ” 35 πŸ’¬ 3 πŸ“Œ 10

Cool!! Can’t wait to try

23.12.2025 20:07 πŸ‘ 2 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
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Final version is out! Our large-scale cryo-ET dataset πŸ”¬ of Chlamydomonas reinhardtii 🦠 is now published in @cp-molcell.bsky.social

Huge collaborative effort! So glad to see the community already using it to develop new resources & tools.

Check it out here: shorturl.at/z4i4c
#CryoEM #CryoET

19.12.2025 16:45 πŸ‘ 137 πŸ” 47 πŸ’¬ 3 πŸ“Œ 1

Happy to share our fun team-up with @centriolelab.bsky.social & @stearnslab.bsky.social to reveal the architecture of the mammalian centriole’s Distal Ring πŸ›Ÿ. Very cool multiscale integration of #UExM πŸ“πŸ”¬with #CryoET β„οΈπŸ”¬. Congrats to @ebertiaux.bsky.social & @computingcaitie.bsky.social #TeamTomo πŸ§ͺ

10.12.2025 11:02 πŸ‘ 53 πŸ” 18 πŸ’¬ 0 πŸ“Œ 0

😭😭 That is so kind, just continuing to explore all the foundational research that came before!!

26.11.2025 19:07 πŸ‘ 3 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

Great talk (and work πŸ§ͺ ) by @computingcaitie.bsky.social from @biozentrum.unibas.ch about exploring multiciliated cells with a complementary trio of structural techniques! Looking forward to sharing the preprint. Thanks for the fab collab @centriolelab.bsky.social @stearnslab.bsky.social #TeamTomo

25.11.2025 19:30 πŸ‘ 23 πŸ” 5 πŸ’¬ 2 πŸ“Œ 0

Tomorrow!!

24.11.2025 15:52 πŸ‘ 2 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0
Preview
JCS Special Issue - 'Cilia and Flagella: from Basic Biology to Disease' - FocalPlane JCS Special Issue - 'Cilia and Flagella: from Basic Biology to Disease' - News

While trying to steer clear of the β€˜best organelle’ debate, we’re delighted to highlight #JCSciliaSI, guest edited by @cilialab.bsky.social & @lottepedersen.bsky.social.

And, we hope that even the most ardent fans of other organelles can agree that cilia are certainly beautiful to image!

13.11.2025 11:25 πŸ‘ 6 πŸ” 4 πŸ’¬ 0 πŸ“Œ 1

Super happy this work is out and included in the really interesting cilia and flagella focused issue!

31.10.2025 14:53 πŸ‘ 6 πŸ” 3 πŸ’¬ 0 πŸ“Œ 0

Halloween card?!

31.10.2025 19:18 πŸ‘ 0 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
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🚨Our collaboration with @centriolelab.bsky.social & @gautamdey.bsky.social is out today in @cp-cell.bsky.social
We show that #Expansion #Microscopy is a broad-spectrum modality for Euks, enabling 3D phenotypic maps rooted to phylogeny.
#ProtistsOnSky #SciComm #SciSky

www.cell.com/cell/fulltex...

31.10.2025 14:41 πŸ‘ 215 πŸ” 98 πŸ’¬ 15 πŸ“Œ 11
Preview
Volume 138 Issue 20 | Journal of Cell Science | The Company of Biologists

Our Special Issue on Cilia and Flagella: from Basic Biology to Disease, guest edited by @cilialab.bsky.social‬ and @lottepedersen.bsky.social, is building. We’ll be highlighting all the articles over the next couple of weeks. Follow along at #JCSciliaSI.
journals.biologists.com/jcs/issue/13...

27.10.2025 10:30 πŸ‘ 14 πŸ” 10 πŸ’¬ 0 πŸ“Œ 3

A class like no other!! From #AI structure hallucination πŸ€– to #CryoEM structure reality πŸ”¬ by @biozentrum.unibas.ch @unibas.ch undergraduate studentsπŸ‘©β€πŸ”¬πŸ‘©β€πŸŽ“ in just a few weeks!

One of their creations is this beautiful flower-shaped tetrameric pore 🌼, a brand new member of the #ProteinCosmos 🧢🧬 πŸ§ͺ

26.10.2025 13:48 πŸ‘ 84 πŸ” 16 πŸ’¬ 1 πŸ“Œ 0

And the INCREDIBLE biophysics and bioEM facilities and protein production facility (Niko and Roman)

25.10.2025 13:51 πŸ‘ 5 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

This production was the result of a huge team effort from the members of @cellarchlab.com, Maier lab, Lim lab, Hiller lab and our neighbor Basile Wicky!

25.10.2025 13:01 πŸ‘ 6 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
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That’s a wrap of the 2nd edition of our one of a kind structural biology block course at the @biozentrum.unibas.ch! In just 6 short weeks students designed protein oligomers; rotated in cryo-ET, cryo-EM SPA, AFM, and NMR labs; and expressed, purified, and structurally characterized their designs

25.10.2025 12:57 πŸ‘ 38 πŸ” 5 πŸ’¬ 1 πŸ“Œ 1

Mark your calendars for some cilia science!!!

21.10.2025 21:40 πŸ‘ 4 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
Young Swiss Tomo Organizers
Elda, Zanetta, Leonie and Florent

Young Swiss Tomo Organizers Elda, Zanetta, Leonie and Florent

Kuppelraum, University of Bern

Kuppelraum, University of Bern

David Kalbermatter from Bern

David Kalbermatter from Bern

Jean Daraspe from Lausanne

Jean Daraspe from Lausanne

Last Friday (17th), we had an amazing first Young Swiss Tomo meeting in Bern, organized with Elda Bauda, Zanetta Kechagia, and @leonieanton.bsky.social!
Over 70 people from πŸ‡¨πŸ‡­ gathered to talk about cryo-electron tomography πŸ”¬.
Huge thanks to the DCI for making the event possible! See you next year! πŸ‘‹

19.10.2025 09:16 πŸ‘ 49 πŸ” 11 πŸ’¬ 0 πŸ“Œ 0