Carmelo Ferrai's Avatar

Carmelo Ferrai

@carmeloferrai

RNAPII &Transcription Regulation -Chromatin Conformation & Nuclear Architecture - ESCs & Neuronal Differentiation - Nuclear Mechanotransduction - Cell Plasticity UMG, Göttingen, Germany

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20.09.2023
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Latest posts by Carmelo Ferrai @carmeloferrai

Join us tomorrow for two exciting enhancer talks!

24.02.2026 19:45 👍 6 🔁 4 💬 0 📌 0
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Self-clustering of three CBX2 molecules drives PRC2 to promote facultative heterochromatinization of Polycomb target genes Ingersoll et al. uncover that approximately three CBX2 molecules drive PRC2 clustering and H3K27me3 deposition in mESCs. This process supports a model in which few CBX2 molecules self-cluster on chrom...

Self-clustering of three CBX2 molecules drives PRC2 to promote facultative heterochromatinization of Polycomb target genes

www.cell.com/molecular-ce...

05.03.2026 20:40 👍 8 🔁 2 💬 0 📌 0

👇🏽👇🏽👇🏽👇🏽👇🏽

05.03.2026 13:18 👍 2 🔁 2 💬 0 📌 0
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Not much time left... but still!
Please share/circulate or apply!

05.03.2026 08:15 👍 6 🔁 6 💬 0 📌 1

Thanks a lot @lizebonaaugust.bsky.social
Happy that you liked it!

05.03.2026 12:05 👍 0 🔁 0 💬 0 📌 0
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04.03.2026 09:04 👍 6 🔁 0 💬 0 📌 0

Wow!

03.03.2026 15:08 👍 0 🔁 0 💬 0 📌 0
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Mechanobiology of the Extracellular Matrix This Collection aims to highlight fundamental and translational advances in ECM mechanobiology.

🔔🧪 Call for Papers – #Mechanobiology of the #ExtracellularMatrix 🧬🛠️

Excited to serve as Guest Editor — together with Jacopo di Russo and Jennifer Young — of a new 𝐧𝐩𝐣 𝐁𝐢𝐨𝐥𝐨𝐠𝐢𝐜𝐚𝐥 𝐏𝐡𝐲𝐬𝐢𝐜𝐬 𝐚𝐧𝐝 𝐌𝐞𝐜𝐡𝐚𝐧𝐢𝐜𝐬 Collection on “Mechanobiology of the ECM”.

Deadline: 14 May 2026!

www.nature.com/collections/...

14.08.2025 15:18 👍 18 🔁 13 💬 0 📌 0

Very nice!

02.03.2026 07:33 👍 1 🔁 0 💬 0 📌 0

👏🏽

23.02.2026 15:07 👍 1 🔁 0 💬 0 📌 0

Reminder that I will be speaking this Wednesday about my postdoc work. You have been warned. 🧪

23.02.2026 14:33 👍 65 🔁 28 💬 5 📌 0
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Thanks!

22.02.2026 14:53 👍 7 🔁 1 💬 0 📌 0

👏🏽

22.02.2026 13:34 👍 0 🔁 0 💬 0 📌 0
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NELF prevents transcriptional readthrough into DNA replication zones in cancer cells - EMBO Reports Regulation of RNA polymerase II (Pol II) transcription is closely associated with cell proliferation. However, it remains unclear how the Pol II transcription program is rewired in cancer to promote u...

NELF prevents transcriptional readthrough into DNA replication zones in cancer cells

link.springer.com/article/10.1...

21.02.2026 07:13 👍 6 🔁 1 💬 0 📌 0

You still have 3 days to apply to the postdoc positions available in my lab 😀
🔬Come and work with us 🔬

20.02.2026 17:03 👍 14 🔁 21 💬 0 📌 0

Hey Chromatin Friends!
Long time no chromatin question...
For many of you, CUT&x (RUN/Tag) works really well but some of you have had their frustrations with CUT and "gone back" to ChIP-Seq. Can you share your experiences in the comments!?
Would love to hear from you!
Sharing is appreciated : )

19.02.2026 16:26 👍 14 🔁 10 💬 2 📌 0

Thanks a lot!

19.02.2026 12:22 👍 0 🔁 0 💬 0 📌 0

Hey Simon, thank you instead. It was great working together!

17.02.2026 14:40 👍 1 🔁 0 💬 0 📌 0

Just saying: if you have the F'ing Nobel Prize and publish every few months in Science or Nature, include the first author as co-corresponding author....

17.02.2026 00:01 👍 33 🔁 5 💬 4 📌 0
LoopBin – a VaDE-based neural network for chromatin loop classification Classifying chromatin loops from 3D genomics data according to their epigenetic and structural attributes is important for inferring their functional roles. Currently, such classification typically relies on the manual intersection of epigenomic signal peaks and loop anchor locations. To automate this, remove peak-calling biases and include information inherent to 3D genomics signal structure, we developed LoopBin, a framework based on a variational deep embedding (VaDE) neural network. We applied LoopBin to kilobase-resolution Micro-C data and segmented tens of thousands of loops into clusters with distinct features using minimal histone modification and transcription factor-binding data. These features were indicative of apparently distinct biological function by each subgroup of loops. Therefore, LoopBin can provide insights into the dynamic shifts in loop classification that can occur upon perturbation of cell homeostasis or signaling. ### Competing Interest Statement The authors have declared no competing interest.

Preprint alert! 🥸

Yajie Zhu (PhD graduate) and Mariano Barbieri (postdoc, @spp2202.bsky.social Accelerator award) produced a package that will classify loops in your #3Dgenomics data based on (whichever) epigenomic data you have available. Keep reading...

1/n

www.biorxiv.org/content/10.6...

21.01.2026 09:05 👍 24 🔁 11 💬 1 📌 0

Thanks a lot! 👋🏽

17.02.2026 10:39 👍 0 🔁 0 💬 0 📌 0

Thanks Mariano!!!!

16.02.2026 10:46 👍 1 🔁 0 💬 0 📌 0

👏🏽

16.02.2026 10:35 👍 1 🔁 0 💬 0 📌 0

Thanks Mark! What a great summary comment! Love it!!! 😍

15.02.2026 14:12 👍 4 🔁 0 💬 0 📌 0
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Postdoc Research Group Schur The Schur lab at the Institute of Science and Technology Austria (ISTA) has an open postdoc position for a highly motivated candidate to be part of our ERC-funded project ActinID. Our Group ...

Open Postdoc position in our lab!
#actin #Huntingtin #cryoET #cellbio
If you enjoy working at the interface of cell biology, structural biology, and quantitative imaging, this could be an excellent fit.

ista.ac.at/en/job/postd...

Please share and feel free to reach out if there are questions!

13.02.2026 15:50 👍 32 🔁 19 💬 1 📌 2

Thanks Miriam!
I am happy that the story is out!
We made some progress since the last time we met!
Glad you liked it!
All the best!
A si biri!

14.02.2026 16:16 👍 2 🔁 0 💬 0 📌 0

🙏🏽

14.02.2026 15:34 👍 2 🔁 0 💬 0 📌 0

Thanks Lennart! Glad you like it!

14.02.2026 15:34 👍 2 🔁 0 💬 0 📌 0
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Tread -1- EpiSci - 🧬 - 🧪 I am very proud to share with you our new study that you can access on @biorxivpreprint.bsky.social (see link below)
"The Interaction with Nanotopographical Environment regulates nuclear mechanoresponse in mESCs via Histone Demethylase KDM3A.
www.biorxiv.org/content/10.6...

14.02.2026 12:01 👍 7 🔁 1 💬 0 📌 0

Tread -11- @akispapantonis.bsky.social @carstenschulte4.bsky.social

We hope that you will like our study! Reach me out for discussions and feedback!

14.02.2026 11:50 👍 4 🔁 1 💬 1 📌 0