@biovoxxel.de
BioImage Analyst, Consulting, Customized Analysis Programming Founder, PhD in biology, Fiji/ImageJ, Inkscape, Java 🧪🔬💻 🇩🇪 🇬🇧 🇪🇦 Homepage: biovoxxel.de All relevant BioVoxxel Links: linktr.ee/biovoxxel LinkedIn Newsletter: http://bit.ly/46mYBL7
Image analysis is often treated as an individual skill—leading to irreproducible pipelines and bias. Sustainable #BioImageAnalysis must be an institutional responsibility: training, automation, standards, and GSP-aligned guidance. Read the full article on LinkedIn:
www.linkedin.com/feed/update/...
To Scale, or not to Scale? - When size matters!
"Scaling" in image analysis software like #ImageJ & #Fiji may be used ambiguous for different meanings:
- specifying pixel sizes
- resizing an image
- resizing a selection
All of those have different use cases and impact. Read more
Beautiful images ≠ usable data. 🎨💻
Ask an image analysis expert BEFORE you start experiments. 20 min prep beats weeks of lost experiments, sweat, tears and frustration.
Read more! bit.ly/46mYBL7
Make BioVoxxel your image analyst of choice
youtu.be/2Xo7_wQucKk
#BioImageAnalysis #Microscopy
We just released a new major version of TrackMate (v8), the cell and organelle tracking plugin of Fiji.
It ships many new features, detailed below, but that are articulated around the following:
To ask, or not to ask?
🎭 already Shakespear knew: “Before thou clicketh ‘Acquire’, consult thy analyst.”
Doing image analysis?
Check image quality, labels, resolution, metadata with your imaging analyst first — your future self will thank you!
Read more: bit.ly/46mYBL7
#Microscopy #BioImaging
And for those that don't know what a handpan is or sounds like...
Here a true master among many of the instrument.
Enjoy listening and support the handpan musicians to protect the freedom of playing and sharing its sound with the world 🌎 🎶 🕊
youtu.be/NSKxvLWqyOY?...
If you ever heard handpan music, you might have been enchanted by its mesmerizing sound.
This is in danger and the handpan might become an "illegal" instrument (if sth. like that ever existed).
Please watch the info video and if you feel like and can, help to protect it!
youtu.be/6fISj2t0GA8?...
😂 is there a word for that in any language? I would at least not know any suitable one in German, English nor Spanish for your description.
Please enlighten me 💡
Basic Microscopic Image Processing and Analysis
ImageJ Macro Scripting for Automatic Image Analysis
From Pixels to Patterns: Applying Machine Learning Tools for Advanced Image Analysis
Doing image analysis?
You struggle with object extraction, automation, or state-of-the-art ML tools?
Want to streamline workflows & get unbiased data! Learn all of that and more with BioVoxxel Online Courses
Don't miss out on the expiring 2025 discounts — Enroll NOW!
#ImageAnalysis #Microscopy
#HappyFluorescenceFriday!
#microscopycommunity- want to learn open source image analysis or share your knowledge to help others? We’ve got a FREE virtual workshop Nov 17-19! Now accepting workshop session applications!
Learn more & sign up: buff.ly/esGIotD
Ever wondered if analyzing your images by using intensity Z-projections impacts your data?
Happy to announce my guest article in Microscopy & Analysis on that topic. It's a very short read but worth for everyone dealing with image analysis!
buff.ly/KJ147tI
#Microscopy #ZProjection #ImageAnalysis
Colocalization isn't just "overlap"—it's potentially 4 distinct analyses or more.
Check out how to dissect colocalization analysis and get a glance on pitfalls and methods to report robust colocalization results.
Read newsletter now! bit.ly/46mYBL7
#Microscopy #BioImageAnalysis #Colocalization
Happy "#FluorescentFriday",
actually luminescence 🌌 🌈
Just feel like sharing some incredible moments recently captured near Tromsø, Norway
Experiencing auroras in nature makes me feel tiny and special at the same time.
It puts daily life into perspective & sparks huge gratefulness 💚
#Auroras
🧠 Even in the age of AI, classical image filters still matter!
They reduce noise, preserve edges, and boost segmentation + ML performance.
Filter smart — shape what your algorithm sees.
🔗 Read more: “To filter, or not to filter?” #ImageAnalysis #AI #Microscopy #Segmentation
bit.ly/46mYBL7
Job alert!
We are looking for a bioimage analysis to work in an image analysis core facility in beautiful Paris. Can I ask you to share this opportunity with your networks?
See also on the forum:
forum.image.sc/t/research-e...
Playing around with how to represent volume in #Snouty light sheet data. Here is a dividing hiPSC with endogenously tagged histone in all three orthogonal projections. Bluer is further away. If anything, it distracts from politics.
🔬 Blinded by colors?
Color ≠ Intensity!
Quantifying intensities from RGB images (e.g. fluorescence, blots, ...) is mostly misleading!
Check your image data type carefully!
Learn more in Newsletter No. 5 - To analyze RGB images, or NOT to analyze RGB images?
Read and subscribe: bit.ly/46mYBL7
Really nice. Looks cool and all without fancy equipment 👏🎬👌
So, now the article also made it into the newsletter and is available!
Bio-Imaging with Shakespeare: pseudocoloring (LUTs) — reveal hidden imaging issues and highlight important data.
✔ Spot noise, shading & saturation
✔ Map data for spatial insight
✔ Make color accessible to all
✔ Why to use a calibration bar
Full guide, tools & tutorial inside 👇
buff.ly/8x7Shiq
To this end, the biweekly "Bio-Imaging with Shakespeare" LinkedIn Newsletter might be of interest.
It discusses different aspects of image processing, analysis and visualization techniques and outlines solutions for some issues mentioned in the article from @jencwaters.bsky.social.
bit.ly/46mYBL7
Everyone who does quantitative microscopy should read this! It’s amazing how many ways we can bias our imaging experiments without realizing we’re doing it.
No. 3 - To Script it, or not to Script it?
ImageJ's GenericDialog or ImageJ2 Script Parameter driven dialogs.
Which one's for you and fits your needs?
BioVoxxel’s latest "Bio-Imaging with Shakespeare" Newsletter explores the trade-offs:
buff.ly/8x7Shiq
#BioImageAnalysis #ImageJ #SciJava #IJMacro
Amazing BlueSky Summer Sale
Last Chance — ONLY 1 DAY LEFT
For any of the #BioVoxxel online self-learning courses
buff.ly/o64cW9Y
Use the code "BSKY101010" at checkout to redeem your discount.
Hurry, and see if any codes are left for you!
Only 10 codes until August 31st 2025 available!🏃♂️
In the 2nd edition of Bio-Imaging with Shakespeare we meet a pesky gremlin — uneven illumination (aka shading, intensity non-uniformity). 🎭🔬 💻
It can quietly bias your segmentation and image analysis results!
So, detect it early, correct it appropriately!
Subscribe on LinkedIn buff.ly/cLPh8eZ
Amazing BlueSky Summer Sale
Your choice: Any of the #BioVoxxel online self-learning courses
buff.ly/o64cW9Y
The first 10 participants that enroll in the next 10 days get 10% OFF
Use the code "BSKY101010" at checkout to redeem your discount.
Hurry, only 10 chances until August 31st 2025!🏃♂️🏃♀️
BlueSky Summer Sale starting tomorrow 8:00 AM (CET) for all individual online courses.
Make sure you are ready for the run: 10% Off for the first 10 that enroll in the next 10 days.
Check out the courses, so you are ready to choose faster then your competitors 🏃♀️ 🏅
buff.ly/o64cW9Y
Embark on your journey to become an #ImageAnalysis champion today! 🏅 🏆
Sign up here: buff.ly/o64cW9Y
1. Basic Microscopic Image Analysis
2. Automate Analyses with #ImageJ #Macro #Scripting
3. Transform Pixels to Patterns with #MachineLearning
#Fiji #BioVoxxel
Any Questions? -> DM me Bsky
I am stunned!
First edition of the "Bio-Imaging with Shakespeare" LinkedIn Newsletter (buff.ly/8x7Shiq) is out for 15h and already 130 subscribers.
If you are interested in the topic FOLLOW ME on LinkedIn and Bsky and SUBSCRIBE
on LinkedIn buff.ly/cLPh8eZ
#bioimageanalysis #biovoxxel #fiji
Eager to stir curiosity and foster dialogue on varied viewpoints? Connect with me on LinkedIn, subscribe to the newsletter (Follow here: buff.ly/cLPh8eZ), and spread the word within your network. Let's engage and exchange ideas!
#BioImaging #ImageAnalysis #BioVoxxel #Conversation
