KB

www.biorxiv.org/content/10.1...

New book by Christopher Bishop, my favorite author

issuu.com/cmb321/docs/...

To make it worse, one of the datasets is scRNA-seq. BTW you meant lfcSE by “SE”, correct?

Processing single-cell RNAseq counts with simpleaf (alevin-fry) Simpleaf is a faster and more efficient alternative to other counters, such as cellranger, and it works with other single-cell chemistries. It is a wrapper f...

Mark(@sanbomics.bsky.social) put together a really nice video & walkthrough on using alevin-fry/simpleAF to process your single-cell RNA-seq data. If you're doing processing of such data, I recommend checking it out as a transparent & open alternative to CellRanger (& way faster) t.co/Hu9ueRduQ9! 🖥️🧬

Thanks Mike! It’s great to hear from you. Three studies, each performed by different institutions, each with different treatment on the same input cell line.

What is your go-to meta-analysis method for bulk RNA-seq datasets? I am trying to perform differential expression analysis.