Bharath Nair (ഭരത് നായർ)'s Avatar

Bharath Nair (ഭരത് നായർ)

@bharathabnair

Loves unifying art and science with philosophy. I study proteins on a spatiotemporal canvas. https://sites.google.com/view/bharathabnair/home

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16.12.2023
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Latest posts by Bharath Nair (ഭരത് നായർ) @bharathabnair

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Good news everyone, _Nature_ has published 66 Open Access articles to date in 2026!

This means Springer-Nature has gobbled up USD$837,540 of science funding this year.

I'm sure we couldn't think of anything better to do with that money.

#OpenScience

30.01.2026 00:53 👍 33 🔁 11 💬 1 📌 1
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The International Council of Archaeozoology www.alexandriaarchive.org/icaz/ has published a statement to condemn the Gaza genocide. You can download it here (Newsletter p.7): www.alexandriaarchive.org/icaz/publica...
@archagainstaparth.bsky.social
@blacktrowel.bsky.social
@icaz-news.bsky.social

01.02.2026 19:31 👍 10 🔁 5 💬 0 📌 0
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📣 Work with us! 📣

We are seeking to appoint a part-time, permanent Biomolecular Research Laboratory Technician!

Hear a bit more about the role from @matthewcollins.bsky.social

📅 Closing date: 2 February

www.cam.ac.uk/jobs/biomole...

15.01.2026 16:20 👍 22 🔁 9 💬 0 📌 0
Infographic titled "ZooMS: Unlocking the Past with Protein Fingerprinting." The top section illustrates the Peptide Mass Fingerprinting process: extracting collagen from a sample, using trypsin enzymes to digest it into peptides, and analyzing it via MALDI-TOF mass spectrometry to create a unique spectrum for species identification. The bottom left section shows how ZooMS identifies fragmented archaeological bones (like Neanderthal remains). The bottom right section depicts the non-destructive "eZooMS" technique for medieval parchment, using a PVC eraser to collect protein samples without damaging manuscripts to identify calf, sheep, or goat skins.

Infographic titled "ZooMS: Unlocking the Past with Protein Fingerprinting." The top section illustrates the Peptide Mass Fingerprinting process: extracting collagen from a sample, using trypsin enzymes to digest it into peptides, and analyzing it via MALDI-TOF mass spectrometry to create a unique spectrum for species identification. The bottom left section shows how ZooMS identifies fragmented archaeological bones (like Neanderthal remains). The bottom right section depicts the non-destructive "eZooMS" technique for medieval parchment, using a PVC eraser to collect protein samples without damaging manuscripts to identify calf, sheep, or goat skins.

#ZooMS infographic and ALT generated from a spoken prompt "Can you explain what zooms is and how this is used to identify archaeological bone? and medieval parchment?" 🦴📜 #Archaeology. Slightly scary, as while it is clearly AI, my net intellectual contribution was 18 spoken words.

21.01.2026 00:49 👍 12 🔁 4 💬 0 📌 2
Monk 1: What are you drawing? 
Monk 2: A poor soul being dragged to hell by demons 
Monk 1: Cool! And what are you planning to use as a border?
Monk 2: I'm thinking freshwater mussels.
Monk 1: That's really perfect

Monk 1: What are you drawing? Monk 2: A poor soul being dragged to hell by demons Monk 1: Cool! And what are you planning to use as a border? Monk 2: I'm thinking freshwater mussels. Monk 1: That's really perfect

This is brilliant.

21.01.2026 21:30 👍 593 🔁 98 💬 12 📌 3
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🧪 Online (Zoom)
📅 23 April 2026
⏰ 14:00–16:00 CEST

✅ Free registration is mandatory!

👉More information in comments!

🔗 ECR Day Registration: docs.google.com/forms/d/e/1F...
🔗 Science Slam Registration: docs.google.com/forms/d/e/1F...

#Proteomics #EarlyCareerResearchers #YPIC #EuPA#EuBIC

21.01.2026 09:26 👍 10 🔁 7 💬 1 📌 0

Massive congratulations @marcdickinson.bsky.social 🎉

15.01.2026 11:07 👍 1 🔁 0 💬 0 📌 0

Thanks for the reminder :)

29.12.2025 14:05 👍 0 🔁 0 💬 0 📌 0
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Remember, once in a Blue Moon, to visit Pastel BioScience's resource pages ...

https://t.ly/EP3hr to see updated list of new #proteomics software packages (153) in 2025 &,

https://t.ly/Mlk39 for Conferences/Symposia/Webinars etc (11) already available in 2026

---
#proteomics #prot-other

29.12.2025 14:00 👍 3 🔁 1 💬 1 📌 0
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Scientists against Milei's cuts of funds for basic science. Buenos Aires, Argentina.

23.12.2025 13:31 👍 11 🔁 8 💬 0 📌 0
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MALDI Deamidation Score (MDS): A fast and flexible method for assessing deamidation in ZooMS data and its application to the Denisova Cave bone assemblage Estimating deamidation from ZooMS spectra has frequently been achieved using the q2e method due to its high-throughput capacity and ease of use. Despi…

The MALDI Deamidation Score is now published! Congratulations @bharathabnair.bsky.social @isma-rgz.mastodon.social.ap.brid.gy and Fei Yang! 🎉🎉🎉🎉
www.sciencedirect.com/science/arti...

06.12.2025 13:11 👍 8 🔁 4 💬 0 📌 0
GitHub - tsutatsuta/rdeamidation: Calculates deamidation rates of N and Q for proteomic results Calculates deamidation rates of N and Q for proteomic results - tsutatsuta/rdeamidation

The Python script reported in Mackie et al. 2018 (Angew Chem Int 57:736–7374) for calculating N and Q deamidation rates from proteomic results has now been ported to the R environment.

GitHub
github.com/tsutatsuta/r...

Zenodo
doi.org/10.5281/zeno...

20.11.2025 20:23 👍 6 🔁 4 💬 1 📌 1
Release v2.0.0-dev · CompOmics/ThermoRawFileParser Development release of version 2.0.0 for public testing Code is fully migrated to .NET 8, thus, Mono dependency is obsolete Added an action for automatic building and testing on all code changes A...

Vladimir Gorshkov manage to put in place the first release for #ThermoRawFileParser (TRFP) with dotnet support, not need for mono anymore. This is TRFP 2.0dev, if you are using this tool, please test/test, we want to release 2.0 including #bioconda and #biocontainer github.com/CompOmics/Th...

29.10.2025 13:28 👍 4 🔁 1 💬 0 📌 0

Looking for feedback. How do you guys does feature intensity normalization? Median across entire experiment? Median by sample, it depends of the experiments?

23.10.2025 18:08 👍 0 🔁 1 💬 2 📌 0
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Struggling to compare Bruker timsTOF methods or extract window schemes from raw .d files? I developed a free desktop tool to solve this: timsCompare! 🚀

It automates the manual work of extracting method parameters, presenting them in a structured and comparable view.

(A thread 🧵)

15.10.2025 11:01 👍 24 🔁 9 💬 2 📌 1
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13.10.2025 18:48 👍 0 🔁 0 💬 0 📌 0
Client Challenge

www.nature.com/articles/d41...

13.10.2025 18:48 👍 1 🔁 0 💬 1 📌 0

lol what?
This just tells me how bad Marriott's reading and media consumption habits are, because it feels like more academics are doing public scholarship than ever!
Maybe they're not all "Great White Scholar" types, but they're there, and doing the work.

24.09.2025 10:41 👍 28 🔁 4 💬 1 📌 1

Alright, help from my "wider" mass tolerance peeps ( @pwilmarth.bsky.social @ypriverol.bsky.social @michaellazear.bsky.social): I have confirmed what you all said that 1.25 Da MS1 and 20 ppm MS2 is a winning DDA combination. But I see in MSFragger I can do an upper and lower. Do +- 1.25 Da on MS1?

03.09.2025 19:31 👍 1 🔁 1 💬 2 📌 0

While journal publishing has always been deeply problematic, hurting both the pace and trajectory of science, something is happening in this moment that is finally causing the system to crumble under its own weight and cost.
1/

08.09.2025 19:52 👍 34 🔁 17 💬 2 📌 4
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Archaeology Lab Technician Job at Durham University | HigherJobz Apply now for Archaeology Lab Technician at Durham University, UK. Full-time permanent role in Archaeology. Deadline: 17 Sept 2025.

Advanced Technician (Archaeological Laboratories) – Durham University, UK
Permanent archaeology lab technician role
Eligibility: Degree in Archaeology
Deadline: 17 Sept 2025
Details: higherjobz.com/archaeology-...

#AcademicJobs #ArchaeologyCareers #UKJobs #PermanentRole #ResearchJobs

06.09.2025 03:37 👍 1 🔁 4 💬 0 📌 0

Congrats 🎉

05.09.2025 15:33 👍 1 🔁 0 💬 0 📌 0
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Chuffed to have participated in the Nordic Conference on Mass Spectrometry and Proteomics 2025 in Odense - "the birth place of proteomics". Also, massive congrats to Amalie to winning the Best Poster Award. @markersofpollution.bsky.social - grateful for the support!

03.09.2025 15:16 👍 4 🔁 1 💬 1 📌 0
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Machine Learning for Multi-Omics Integration 15-17 December 2025 Dept. Evolutionary Biology, Ecology & Environmental Sciences Faculty of Biology, University of Barcelona Institut de Recerca de la Biodiversitat (IRBio) Av. Diagonal, 643, Les ...

We would like to inform you that only four seats are left for the in-person course, “Machine Learning for Multi-Omics Integration,” with @oskolkov.bsky.social taking place on 15–17 December at the University of Barcelona @irbio-ub.bsky.social

www.physalia-courses.org/courses-work...

02.09.2025 14:21 👍 4 🔁 3 💬 0 📌 1
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Symposia - SMBE 2026 - Copenhagen Denmark SMBE 2026 Symposia Check deadlines and important dates below.  Days Hours Minutes Seconds Conference Symposia We are now accepting proposals for symposium for the 2026 Annual meeting taking place in Copenhagen, Denmark. Selection of proposals will prioritize the interests of SMBE members, emphasizing innovative scientific developments while ensuring geographic and gender diversity among the participants. […]

The SMBE 2026 Annual Meeting in Copenhagen is open for symposium proposals from Sept 1 to Oct 15, 2025. Details at https://smbe2026.org/symposia/. Looking forward to your submissions! #conference

03.09.2025 00:05 👍 10 🔁 7 💬 0 📌 0
PAASTA Seminar Series - Ioannis Patramanis
PAASTA Seminar Series - Ioannis Patramanis YouTube video by PAASTA community

Following a marvelous time at ISBA11 and our PAASTA conference, we're back to sharing the work of our community with you here!

@ipatramanis.bsky.social PAASTA talk from March about PaleoProPhyler a tool for #phylogenies from ancient proteins is now live on our YouTube youtu.be/2gVEQyinL4A

02.09.2025 08:39 👍 14 🔁 7 💬 0 📌 0
More than 500 international scholars attended ISBA 11.  Here are many of them looking up at the camera in a large group shot

More than 500 international scholars attended ISBA 11. Here are many of them looking up at the camera in a large group shot

Thanks to @isbarchaeology.bsky.social and @isba11.bsky.social for a great conference.

I mentioned the legacy of Henk Kars of VU who established ISBA

Geoarchaeology closed. Here is the link to the petition to save Earth Sciences @vuamsterdam.bsky.social

www.change.org/p/red-aardwe...

01.09.2025 16:04 👍 19 🔁 8 💬 0 📌 0
Picture of the roll-up presenteing PCI Archaeology during the congress, and of the ISBA11 tote bag.

Picture of the roll-up presenteing PCI Archaeology during the congress, and of the ISBA11 tote bag.

PCI Archaeology was at @isba11.bsky.social in Turin last week! Stay tuned for new #openaccess biomolecular papers soon with full transparency in the editorial process!

Thank you @matthewcollins.bsky.social and Marta Arzarello for sharing our initiative!
@isbarchaeology.bsky.social 🧪🏺🦣

01.09.2025 08:53 👍 19 🔁 3 💬 0 📌 0

Fun working with @archaeosheep (not on bsky yet... xD) @isma-rgz.mastodon.social.ap.brid.gy and @drsambrown.bsky.social. Do check it out!!!

29.08.2025 22:12 👍 1 🔁 0 💬 0 📌 0
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[ASAP] Simulating Collision-Induced Dissociation Tandem Mass Spectrometry (CID-MS/MS) for the Blood Exposome Database Using Quantum Chemistry Methods - A Pilot Study Journal of the American Society for Mass SpectrometryDOI: 10.1021/jasms.5c00179

(JASMS) [ASAP] Simulating Collision-Induced Dissociation Tandem Mass Spectrometry (CID-MS/MS) for the Blood Exposome Database Using Quantum Chemistry Methods - A Pilot Study: Journal of the American Society for Mass SpectrometryDOI: 10.1021/jasms.5c00179 (RSS) #MassSpecRSS #JASMS

29.08.2025 18:15 👍 2 🔁 2 💬 0 📌 0