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Travis Wheeler

@wheelerlab.org

Associate Professor, University of Arizona Algorithms, Machine Learning, Data Resources Computational Genomics, Drug Discovery, Animal Tracking, etc. wheelerlab.org

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16.12.2023
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Latest posts by Travis Wheeler @wheelerlab.org

๐Ÿ–ฅ๏ธ ๐Ÿงฌ โš›๏ธ ๐Ÿ”ฌ Plz spread the word. 2-week computational biology workshop in Singapore. No registration fee or expenses for US citizens. Protein annotation, function, structural modeling, and simulation. ~35 attendees. Lectures and hands-on tutorials with intensive instructor interaction. compbioasia.net

02.03.2026 21:53 ๐Ÿ‘ 4 ๐Ÿ” 5 ๐Ÿ’ฌ 0 ๐Ÿ“Œ 0
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Assistant Professor - Psychology (Behavioural Neuroscience) Assistant Professor - Psychology (Behavioural Neuroscience)

New neuroscience job at Wilfrid Laurier University. You may not know the name, but science has been growing fast. It is also down the street from Canada's top tech university (Waterloo) and a world class physics institute (Perimeter). I feel happy and lucky to be here careers.wlu.ca/job/Waterloo...

02.03.2026 21:03 ๐Ÿ‘ 4 ๐Ÿ” 10 ๐Ÿ’ฌ 0 ๐Ÿ“Œ 1

The FM-index LF mapping is just an LSB radix sort step!

26.02.2026 03:01 ๐Ÿ‘ 4 ๐Ÿ” 1 ๐Ÿ’ฌ 1 ๐Ÿ“Œ 0

๐Ÿ–ฅ๏ธ ๐Ÿงฌ โš›๏ธ ๐Ÿ”ฌ Plz spread the word. 2-week computational biology workshop in Singapore. No registration fee. No expenses for US citizens. Protein annotation, function, structural modeling, and simulation. ~35 attendees. Lectures and hands-on tutorials with intensive instructor interaction. compbioasia.net

08.02.2026 19:59 ๐Ÿ‘ 2 ๐Ÿ” 3 ๐Ÿ’ฌ 0 ๐Ÿ“Œ 0

๐Ÿ–ฅ๏ธ ๐Ÿงฌ โš›๏ธ ๐Ÿ”ฌ Plz spread the word. 2-week computational biology workshop in Singapore. No registration fee. No expenses for US citizens. Protein annotation, function, structural modeling, and simulation. ~35 attendees. Lectures and hands-on tutorials with intensive instructor interaction. compbioasia.net

08.02.2026 19:59 ๐Ÿ‘ 2 ๐Ÿ” 3 ๐Ÿ’ฌ 0 ๐Ÿ“Œ 0

Someone held a clandestine birthday party in your office last night, and forgot to clean up after themselves?

06.02.2026 17:45 ๐Ÿ‘ 0 ๐Ÿ” 0 ๐Ÿ’ฌ 1 ๐Ÿ“Œ 0

Organized by faculty from University of Montana and University of Arizona, with National University of Singapore and A*STAR. Lecturers and project mentors from the USA, Europe, and Asia.

05.02.2026 17:22 ๐Ÿ‘ 0 ๐Ÿ” 0 ๐Ÿ’ฌ 0 ๐Ÿ“Œ 0

Requirements: Grad-level research experience in at least one stream (genomics, computational structural biology, MD, or AI), interest in learning the others, comfort with UNIX command line, and some programming proficiency.

05.02.2026 17:22 ๐Ÿ‘ 0 ๐Ÿ” 0 ๐Ÿ’ฌ 1 ๐Ÿ“Œ 0

Topics span (light) genomics โ†’ molecular modeling โ†’ molecular dynamics, all through the lens of protein function. Emphasis on modern computational methods (AI & simulation). Mix of lectures + hands-on small-group project work.

05.02.2026 17:22 ๐Ÿ‘ 0 ๐Ÿ” 0 ๐Ÿ’ฌ 1 ๐Ÿ“Œ 0
Compbio Asia

Please spread the word:

We invite applications to a two-week Computational Biology workshop in Singapore, June 14-27.

This NSF-funded workshop brings together 16-20 US grad students with international peers.
Apply by March 21: compbioasia.net
๐Ÿงต Details below:

05.02.2026 17:22 ๐Ÿ‘ 3 ๐Ÿ” 9 ๐Ÿ’ฌ 2 ๐Ÿ“Œ 1

22-year-old me would have been all-in on this advice. Pretty sure I did it once or twice.

53-year-old me is like: "Could I pull it off? I think I could do it ... honey, should I try it?!"

31.01.2026 23:34 ๐Ÿ‘ 0 ๐Ÿ” 1 ๐Ÿ’ฌ 0 ๐Ÿ“Œ 0

One might say that your social media influence is saaging

11.01.2026 19:13 ๐Ÿ‘ 1 ๐Ÿ” 0 ๐Ÿ’ฌ 0 ๐Ÿ“Œ 0
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Xfinity for the win!

06.12.2025 16:29 ๐Ÿ‘ 0 ๐Ÿ” 0 ๐Ÿ’ฌ 0 ๐Ÿ“Œ 0
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Reminiscent of the copy of Procrastinator's Handbook sitting on our bookshelf.

26.11.2025 22:19 ๐Ÿ‘ 4 ๐Ÿ” 0 ๐Ÿ’ฌ 0 ๐Ÿ“Œ 0

Anyone who has ever had the joy of using Google tech support will know that ... ugh.

So it's completely on-brand that, when I tried to submit a bug report today, this happened:

(1) Push buttons to raise "Bug Report" window
(2) Click "Bug Report" button
(3) nothing ...

(Support couldn't help)

10.11.2025 20:19 ๐Ÿ‘ 3 ๐Ÿ” 0 ๐Ÿ’ฌ 0 ๐Ÿ“Œ 0

For I was hungry, and you gave me foodโ€ฆ whatever you did for one of the least of these brothers and sisters of mine, you did for me.

- Some woke schmuck

07.11.2025 17:27 ๐Ÿ‘ 0 ๐Ÿ” 0 ๐Ÿ’ฌ 0 ๐Ÿ“Œ 0
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Exciting symposium on AI and Biology at EMBO | EMBL in Heidelberg on 10-13 March 2026!

Excellent lineup of invited speakers across various scales of biology!

Deadline for abstract submission is coming up โ€” Dec 2.

๐Ÿ”— www.embl.org/about/info/c...

#EESAIBio @EMBLEvents

07.11.2025 00:16 ๐Ÿ‘ 9 ๐Ÿ” 7 ๐Ÿ’ฌ 0 ๐Ÿ“Œ 1
RepeatMasker Home Page

A new release of RepeatMasker is available. This version fixes a bug introduced in 4.2.1 that impacted the handling of poly-A tails and the naming of LINE annotations. See repeatmasker.org for more release details.

03.11.2025 18:07 ๐Ÿ‘ 6 ๐Ÿ” 3 ๐Ÿ’ฌ 0 ๐Ÿ“Œ 0

I just asked my dogs, and they were pretty clear on the concept: just after 5PM *is* dinner time.

03.11.2025 00:57 ๐Ÿ‘ 2 ๐Ÿ” 0 ๐Ÿ’ฌ 0 ๐Ÿ“Œ 0
The allotetraploid lycophyte Selaginella rupincola growing among the boulders at Cochise Stronghold in the Dragoon Mountains southeast of Tucson, Arizona.

The allotetraploid lycophyte Selaginella rupincola growing among the boulders at Cochise Stronghold in the Dragoon Mountains southeast of Tucson, Arizona.

Xanthisma spinulosum growing outside a gym in Tucson, Arizona.

Xanthisma spinulosum growing outside a gym in Tucson, Arizona.

Selaginella arizonica X eremophila hybrid zone at Alamo Canyon in Organ Pipe National Monument.

Selaginella arizonica X eremophila hybrid zone at Alamo Canyon in Organ Pipe National Monument.

A Dieteria sp. being visited by a skipper in the White Mountains of Arizona.

A Dieteria sp. being visited by a skipper in the White Mountains of Arizona.

I'm recruiting PhD students for the Barker Lab @uofa-eeb.bsky.social We study plant evolutionary genomics - polyploidy, hybridization & machine learning for genome evolution. Work with Selaginella, Xanthisma, Brassica & more. Funding available via CAMBIUM Fellowships. Reach out if interested! ๐Ÿงฌ๐ŸŒต๐Ÿค–

24.10.2025 05:01 ๐Ÿ‘ 81 ๐Ÿ” 56 ๐Ÿ’ฌ 3 ๐Ÿ“Œ 1
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Please pass along - Our CAMBIUM NSF NRT provides fellowships to support new PhD students at @uarizona.bsky.social To train & prepare a new generation of scientists to harness the revolution in biodiversity big data to adapt to & mitigate the impacts of climate change. cambium.arizona.edu ๐Ÿงช๐ŸŒ๐ŸŒพ

21.10.2025 05:17 ๐Ÿ‘ 26 ๐Ÿ” 16 ๐Ÿ’ฌ 0 ๐Ÿ“Œ 1

Important open model for predicting structures for proteins (and friends)

29.10.2025 00:52 ๐Ÿ‘ 4 ๐Ÿ” 0 ๐Ÿ’ฌ 0 ๐Ÿ“Œ 0

Don't miss this opportunity to co-run a research group with @ewanbirney.bsky.social !

Ewan's science speaks for itself, and the EBI is an exceptional place to do cutting edge computational genomics.

11.10.2025 16:12 ๐Ÿ‘ 2 ๐Ÿ” 0 ๐Ÿ’ฌ 0 ๐Ÿ“Œ 0

I mean, one way to approach this is: when a paper is published under a closed license, and there isn't even a copy on a preprint server, it doesn't need to be cited (or read).

(with all apologies to the authors of this particular paper)

10.10.2025 17:54 ๐Ÿ‘ 3 ๐Ÿ” 1 ๐Ÿ’ฌ 0 ๐Ÿ“Œ 0

Dream postdoc - Rob's science is excellent (and he's pretty great, too)

08.10.2025 16:57 ๐Ÿ‘ 8 ๐Ÿ” 2 ๐Ÿ’ฌ 1 ๐Ÿ“Œ 0

Important work being done here.
vvvvvvvvv
vvvvv
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07.10.2025 23:24 ๐Ÿ‘ 1 ๐Ÿ” 0 ๐Ÿ’ฌ 0 ๐Ÿ“Œ 0
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RNA Structure beyond Canonical Base Pairs Guided by Evolution - Harvard University - Department of Molecular & Cellular Biology In addition to messenger RNA (mRNA) that provide the code for proteins, there are other RNAs that exert their function just as RNA, usually referred to as non-coding [โ€ฆ]

RNA Structure beyond Canonical Base Pairs Guided by Evolution ๐Ÿงช๐Ÿงฌ #AcademicSky #higherEd
www.mcb.harvard.edu/department/n... @rivaselenarivas.bsky.social @rachellegaudet.bsky.social @cryptogenomicon.bsky.social @dulaclab.bsky.social @neurovenki.bsky.social @naoshigeuchida.bsky.social

07.10.2025 22:37 ๐Ÿ‘ 26 ๐Ÿ” 9 ๐Ÿ’ฌ 1 ๐Ÿ“Œ 0

Quite the complement.

05.10.2025 23:05 ๐Ÿ‘ 2 ๐Ÿ” 0 ๐Ÿ’ฌ 0 ๐Ÿ“Œ 0

I think that's "juice of a lemon".

03.10.2025 18:38 ๐Ÿ‘ 1 ๐Ÿ” 0 ๐Ÿ’ฌ 1 ๐Ÿ“Œ 0

TIL: 10^60 is far greater than 10^67

29.09.2025 02:49 ๐Ÿ‘ 2 ๐Ÿ” 1 ๐Ÿ’ฌ 1 ๐Ÿ“Œ 0