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Niema Moshiri

@niema.net

Associate Teaching Professor of Computer Science at UC San Diego, Bioinformatician by training, SD-raised. https://niema.net

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03.07.2023
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Latest posts by Niema Moshiri @niema.net

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Excited to share this preprint that describes my latest work on using GPUs to accelerate processing of RNA-seq data.

The title says it all: "RNA-seq analysis in seconds using GPUs" now on biorxiv www.biorxiv.org/content/10.6... and github github.com/pachterlab/k...

Figure 1 shows they key result

06.03.2026 19:32 πŸ‘ 99 πŸ” 41 πŸ’¬ 4 πŸ“Œ 6

Hegseth needs to stand trial after this as a war criminal. Between this attack and the girls' school, there's no ambiguity. He is responsible for mass murder and must be held accountable.

07.03.2026 01:32 πŸ‘ 5063 πŸ” 1475 πŸ’¬ 97 πŸ“Œ 46

Awesome! I may try to get vault access this year, so I'll look out for it!

07.03.2026 04:44 πŸ‘ 1 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

Any chance it'll be recorded / slides shared? πŸ˜… I can't make it to GDC this year 😒

07.03.2026 04:35 πŸ‘ 2 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0

Final draft of the 'Preservation is Profit' GDC presentation is done!

For those attending, I added some treats pulled straight from the archives throughout the slide deck. I wonder if you can recognize the games πŸ‘€

07.03.2026 04:25 πŸ‘ 4 πŸ” 1 πŸ’¬ 1 πŸ“Œ 0

I have family in Iran who are worried they're going to be killed. Pete Hegseth, and everyone else responsible in the murder of Iranian civilians, are war criminal pieces of shit who need to stand trial and be prosecuted for their war crimes.

07.03.2026 04:17 πŸ‘ 7 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0
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FDA’s controversial vaccine chief will exit agency next month | CNN The US Food and Drug Administration’s head of vaccines and biologic medicines will leave the agency at the end of April, a spokesperson confirmed to CNN on Friday.

Vinay Prasad has been an a noxious influence on public health and drug regulation. Good riddance. UCSF should not take him back. He should wander in the wilderness forever. www.cnn.com/2026/03/06/h...

06.03.2026 23:39 πŸ‘ 850 πŸ” 216 πŸ’¬ 31 πŸ“Œ 17
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Nintendo suing US government over tariffs
aftermath.site/nintendo-tarif...

06.03.2026 18:25 πŸ‘ 2193 πŸ” 513 πŸ’¬ 57 πŸ“Œ 448
Job Opening: Data Scientist – Grant Witness Grant Witness seeks a data scientist for a full-time position on our team tracking changes to U.S. federal grantmaking. We are also hiring for part-time/contract positions. Join us!

Grant Witness is hiring! We're seeking a full-time data scientist to join our team building data resources to support journalism, litigation, and activism protecting science, public health, and the rule of law. grant-witness.us/apply.html #rstats

06.03.2026 21:14 πŸ‘ 46 πŸ” 32 πŸ’¬ 1 πŸ“Œ 3

For me, I'm super tempted by the dual-screen ones for DS / 3DS emulation. I have a 2DS, but emulating games on a larger + higher-resolution OLED screen with higher internal resolution is enticing. But I don't have enough time to play them to justify it right now πŸ˜”

06.03.2026 23:02 πŸ‘ 0 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
06.03.2026 22:52 πŸ‘ 3 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
An headshot image of red-haired Rebecca Heineman whilst performing at an industry talk

An headshot image of red-haired Rebecca Heineman whilst performing at an industry talk

Rebecca Heineman will posthumously receive the Ambassador Award at the GDC Awards.

A games industry legend - first ever game tournament champion in 1980, Interplay co-founder, Bard's Tale 3 designer, worked on the PSP, PS4, Xbox360, many ports... πŸ‘

(Read more at GamesIndustry)

06.03.2026 13:33 πŸ‘ 811 πŸ” 255 πŸ’¬ 5 πŸ“Œ 10
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a close up of a man in a military uniform looking at the camera with a serious look on his face . Alt: Matt Damon in "Saving Private Ryan" getting old GIF

*stares in 32 years old*

06.03.2026 22:39 πŸ‘ 0 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

Good riddance. Vinay Prasad, and all of RFK's other quacks (Jay Bhattacharya, Marty Makary, etc.), will be remembered in infamy

06.03.2026 22:33 πŸ‘ 3 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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Exclusive | FDA’s Controversial Vaccines Chief Will Leave the Agency FDA’s Controversial Vaccines Chief Will Leave the Agency

Breaking: The FDA’s controversial vaccines chief is leaving the agency on.wsj.com/4ujEaKk

06.03.2026 21:57 πŸ‘ 43 πŸ” 9 πŸ’¬ 3 πŸ“Œ 9

Update: Prasad out of FDA by end of April.

www.reuters.com/business/hea...

06.03.2026 22:25 πŸ‘ 15 πŸ” 4 πŸ’¬ 0 πŸ“Œ 1
Custom build your own SNES controllers with the OpenSFC project! Install guide and demonstration
Custom build your own SNES controllers with the OpenSFC project! Install guide and demonstration YouTube video by Long Island Retro Gaming

The #OpenSFC controllers have launched πŸ‘€

Check out the video feature by @1uprestorations.bsky.social

You can get the boards on my Ko-Fi, eBay or at 1up. They will also be available at retroupgrades soon.

#SuperFamicom #SNES

youtu.be/qigm2QdvjLU

06.03.2026 19:06 πŸ‘ 12 πŸ” 4 πŸ’¬ 1 πŸ“Œ 0

ICYMI I am running a change org petition to get Filmauro to release a digital copy or Blu-ray of this movie.
GET THEM TO GIVE US SEGAWORLD IN 1080P
c.org/dmHYWCxChV

06.03.2026 12:10 πŸ‘ 3 πŸ” 3 πŸ’¬ 0 πŸ“Œ 0
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Dynamics of natural selection preceding human viral epidemics and pandemics Using a phylogenetic framework to characterize natural selection, we investigate the hypothesis that zoonotic viruses require adaptation prior to zoon…

There's a common misconception that zoonotic viruses require significant adaptation to jump from animals to cause human epidemics.

Not so πŸ‘‡.

Further, we see clear signs of 1977 flu experiencing cell passage, prior to epidemic.

SARS-CoV-2? Business as usual.

www.sciencedirect.com/science/arti...

06.03.2026 17:33 πŸ‘ 124 πŸ” 56 πŸ’¬ 6 πŸ“Œ 1

Ask me for help converting some or all of your driving to transit in San Diego. If I’m unable to give you a good answer, I will suggest actions you can take to oppose Newsom’s and the legislature’s suicidal insistence on car dependency.

06.03.2026 17:45 πŸ‘ 15 πŸ” 4 πŸ’¬ 0 πŸ“Œ 0

Oof yikes! I wonder what goes through people's minds to not realize how condescending comments like that are 😬

06.03.2026 17:43 πŸ‘ 1 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0

LOL I fortunately haven't gotten that one yet (at least not that I remember) πŸ˜‚

06.03.2026 17:19 πŸ‘ 1 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0

Don't rein ICE in: abolish it entirely

06.03.2026 01:40 πŸ‘ 0 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

*interspersed is maybe not the best word to use. These new documents seem to be contiguous, but the big gap is between the end of the prior Data Set 12 release and the beginning of these

06.03.2026 01:38 πŸ‘ 4 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

Based on the newly-uploaded EFTA numbers, it looks like there's >125,000 pages of missing documents interspersed between them github.com/niemasd/Epst...

06.03.2026 00:59 πŸ‘ 11 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
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Manga's First Century: How Creators and Fans Made Japanese Comics, 1905-1989 How Creators and Fans Made Japanese Comics, 1905-1989

It's World Book Day! You can read my history of manga to take your mind off things. bookshop.org/a/117815/978...

05.03.2026 21:52 πŸ‘ 3 πŸ” 1 πŸ’¬ 0 πŸ“Œ 1
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Philippine news groups launch public chat rooms to strengthen local journalism Sunstar in Cebu, the Daily Guardian in Iloilo, the Philippine Press Institute, and Rappler invite you to join journalist-run chat rooms for a healthier relationship with the news

Rappler rolled out our matrix protocol chat app in 2023. In 2025, up to 65 news groups joined a shared reality: public chat rooms to strengthen local journalism. Sick of insidious manipulation of Big Tech? Join us! rappler.com/about/specia... via
@rappler.com.web.brid.gy #ReclaimOurRights

05.03.2026 17:16 πŸ‘ 31 πŸ” 7 πŸ’¬ 0 πŸ“Œ 1
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DHS Secretary Kristi Noem is out, Trump says, after controversial tenure President Donald Trump announced the decision on social media and said Noem would be replaced with Sen. Markwayne Mullin (R-Okla.).

Kristi Noem will go down as the most shamelessly incompetent and cruel Homeland Security Secretary in U.S. history.

Firing her is not enough. NOEM, GREG BOVINO, and STEPHEN MILLER all must be held accountable for terrorizing and endangering the American people.

05.03.2026 19:32 πŸ‘ 2426 πŸ” 650 πŸ’¬ 201 πŸ“Œ 63

+1 for Bazzite if you're interested in SteamOS

Ubuntu is a pretty standard Linux distro as well. Linux Mint is great as well (it's based on Ubuntu and Debian: Ubuntu is itself based on Debian)

05.03.2026 21:20 πŸ‘ 1 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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Heading to GDC next week? I would love to meet up with you and talk all things video game preservation!

Join @somecronzaguy.bsky.social and I for "Establishing the Standards and Practices of Game Preservation Roundtable" on Monday, March 9 at 1:50PM

05.03.2026 17:47 πŸ‘ 13 πŸ” 4 πŸ’¬ 0 πŸ“Œ 0