nf-core

New blog post! Making nf-core/configs strict syntax compliant
https://nf-co.re/blog/2026/configs-strict-syntax/

Release nf-core/pixelator 3.0.0 · nf-core/pixelator [3.0.0] - 2026-02-23 Changed Set default pna_graph_component_size_min_threshold to 8000 instead of null (i.e. automatic) by @ptajvar #183. Removed Support for MPX in the pipeline by @johandahlbe...

Pipeline release! nf-core/pixelator v3.0.0 - nf-core/pixelator 3.0.0!

Please see the changelog: https://github.com/nf-core/pixelator/releases/tag/3.0.0

Release nf-core/seqinspector 1.0.1 - Penelope Ruth "Penny" Gadget · nf-core/seqinspector What's Changed Zenodo by @maxulysse in #180 Back to dev by @maxulysse in #181 FIX: Remove diff for bwamem2/mem by @maxulysse in #182 FIX: tag collision warning by @maxulysse in #183 FIX: No fasta ...

Pipeline release! nf-core/seqinspector v1.0.1 - nf-core/seqinspector 1.0.1 - Penelope Ruth "Penny" Gadget!

Please see the changelog: https://github.com/nf-core/seqinspector/releases/tag/1.0.1

Release nf-core/rnaseq v3.23.0 - Gallium Gecko · nf-core/rnaseq What's Changed Bump version after release 3.22.2 by @pinin4fjords in #1663 Update preprocessing with multiple rRNA removal tools by @pinin4fjords in #1664 Add ARM containers, changelog updates, an...

Pipeline release! nf-core/rnaseq v3.23.0 - nf-core/rnaseq v3.23.0 - Gallium Gecko!

Please see the changelog: https://github.com/nf-core/rnaseq/releases/tag/3.23.0

Release nf-core/seqinspector 1.0.0 - Inspector Gadget · nf-core/seqinspector Initial release of seqinspector What's Changed Skip RUNDIRPARSER if no rundir information is available by @matrulda in #167 Address review comments by @maxulysse in #168 prepare release 1.0.0 by @...

Pipeline release! nf-core/seqinspector v1.0.0 - nf-core/seqinspector 1.0.0 - Inspector Gadget!

Please see the changelog: https://github.com/nf-core/seqinspector/releases/tag/1.0.0

Train-the-Trainer: Teaching Nextflow for Beginners
🗓️ Mar 28, 2026 |📍ABRF, Pittsburgh US

This hands-on workshop is designed to equip trainers with the knowledge, skills, and confidence to deliver engaging and effective training to Nextflow newcomers. hubs.la/Q043l2Xc0

Let's goooo! Registration numbers for 2025 were insane, let's see if we can do even better in 2026 😉

Join our webinar to see how to build, test, and deploy an entire @nextflow.io pipeline for protein design, going from an empty repository to running at scale in days vs weeks. Register now: hubs.la/Q043jzg_0

Release v2.0.1 - Greedy Gobbler · nf-core/coproid Changed Added extra information to the README about running the pipeline offline and on HPC with container restrictions Updated nf-core/tools to the latest version (3.5.2)

Pipeline release! nf-core/coproid v2.0.1 - v2.0.1 - Greedy Gobbler!

Please see the changelog: https://github.com/nf-core/coproid/releases/tag/2.0.1

Release v1.2.6 - Bouncy Basenji Patch · nf-core/taxprofiler Added #678 Included metaval.config to generat input files for genomic-medicine-sweden/metaval (added by @LilyAnderssonLee) #655 Added nf-tests for test profile (added by @sofstam) Fixed #674 Fix...

Pipeline release! nf-core/taxprofiler v1.2.6 - v1.2.6 - Bouncy Basenji Patch!

Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/1.2.6

Release 1.1.0 · nf-core/pathogensurveillance Added --max_parallel_downloads parameter to control how many downloads can occur in parallel. This can be used in HPC/cloud contexts to raise the default maximum that is process-specific and gener...

Pipeline release! nf-core/pathogensurveillance v1.1.0 - 1.1.0!

Please see the changelog: https://github.com/nf-core/pathogensurveillance/releases/tag/1.1.0

Release 3.8.1 - Laitaure · nf-core/sarek What's Changed Fix bcftools concat on Strelka somatic VCFs by @FriederikeHanssen in #2128 Full Changelog: 3.8.0...3.8.1

Pipeline release! nf-core/sarek v3.8.1 - 3.8.1 - Laitaure!

Please see the changelog: https://github.com/nf-core/sarek/releases/tag/3.8.1

Release v2.1.0 - Gracious Goblin - [2026-02-10] · nf-core/createtaxdb Added #117 - Updated to nf-core/tools template 3.5.1 (by @jfy133) #143 - Documented how to resovle KrakenUniq unbound variable jellyfish issue (❤️ to @flass for suggesting, added by @jfy133) #140 ...

Pipeline release! nf-core/createtaxdb v2.1.0 - v2.1.0 - Gracious Goblin - [2026-02-10]!

Please see the changelog: https://github.com/nf-core/createtaxdb/releases/tag/2.1.0

Release nf-core/rnavar 1.2.3 - Yellow Hammer Head · nf-core/rnavar Minor code refactoring Topic versions everywhere Nextflow strict syntax everywhere workflow output conversion started What's Changed back to dev by @maxulysse in #266 Update all modules by @maxul...

Pipeline release! nf-core/rnavar v1.2.3 - nf-core/rnavar 1.2.3 - Yellow Hammer Head!

Please see the changelog: https://github.com/nf-core/rnavar/releases/tag/1.2.3

Release 3.8.0 - Sitojaure · nf-core/sarek Added Addition of the following tools: VEP Condel plugin to calculate Consensus Deleteriousness scores for missense mutations VEP Mastermind plugin to retrieve citation counts from Mastermind Geno...

Pipeline release! nf-core/sarek v3.8.0 - 3.8.0 - Sitojaure!

Please see the changelog: https://github.com/nf-core/sarek/releases/tag/3.8.0

nf-core Details of past and future hackathons around nf-core.

🎉 Registration for the nf-core hackathon is now open! Join us online or in-person on March 11-13 for collaborative coding, pipeline development, and community building 💻

Bring your own project or choose from our community issues.🔧 Every project has a lead to guide you! nf-co.re/events/hacka...

Release Yellow Saiga · nf-core/proteinannotator v1.0.0 - Yellow Saiga - [2026/02/09] Initial release of nf-core/proteinannotator, created with the nf-core template. #68 - Using the ARIA2 and UNTAR nf-core modules to download and decompress the ...

Pipeline release! nf-core/proteinannotator v1.0.0 - Yellow Saiga!

Please see the changelog: https://github.com/nf-core/proteinannotator/releases/tag/1.0.0

💻The @nf-co.re Hackathon is back on Mar 11-13, 2026 ! 🍏Whether you're new to nf-core or already involved, this hackathon is perfect for connecting with fellow @nextflow.io developers. Collaborate on projects, share coding insights, and learn from experienced contributors

⏰ Starting Monday! Nextflow Training Week by @seqera.io

If you've been thinking about learning Nextflow, now's the time.

This free, self-paced training includes live support from experts across multiple time zones and the chance to earn an official certificate from the Nextflow creators⬇️

Release Tarantallegra · nf-core/airrflow Added #413 Bump versions to dev. #413 Updated nf-core template to v3.3.2. #413 Speeding up tests with smaller test data. #416 Update Takara protocol names and docs. Add Takara SMART-seq protocol. ...

Pipeline release! nf-core/airrflow v5.0.0 - Tarantallegra!

Please see the changelog: https://github.com/nf-core/airrflow/releases/tag/5.0.0

Release mag 5.4.0 - Yellow Frog · nf-core/mag Added #965 - Add support for the generation of custom contig to bin map files for all bins and refined bins (by @jfy133, @prototaxites) #965 - Add support for optional saving of DAS Tool inpout co...

Pipeline release! nf-core/mag v5.4.0 - mag 5.4.0 - Yellow Frog!

Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.4.0

Release 2.2.0 - Holocron · nf-core/hlatyping Added #201 - Option to run HLA-HD (v1.7.1) for Class I and Class II HLA typing (@riederd) #204 - CI tests for HLA-HD using encrypted licensed software, following nf-core external tool pattern (@jo...

Pipeline release! nf-core/hlatyping v2.2.0 - 2.2.0 - Holocron!

Please see the changelog: https://github.com/nf-core/hlatyping/releases/tag/2.2.0

Hackathon - March 2026 A hybrid hackathon to develop nf-core together

🗓️ Key dates:

✅ Project proposals — Open NOW
✅ Site registration — Open NOW
⏳ Participant registration — Opens Soon

Get your sites and projects in ASAP!

Questions? Join #hackathon-mar-2026 on nf-core Slack
👉 nf-co.re/events/2026/...

🌍 Want to host a local hub? WE NEED YOU!

Book a meeting room, café, or any space. Even if it's just you and a few colleagues! Submit a PR to register your hub — no booking needed yet, just let us know you're interested.

Seqera will provide support; you won’t be doing this alone! 😉

🆕 Projects will be designated for a specific in-person hub OR fully online

At a hub? Join or create a project for your site! Joining remotely? Pick or propose an online project!

Project leaders will be at their designated location to support you

Hackathon - March 2026 A hybrid hackathon to develop nf-core together

🎉 Save the date! nf-core Hackathon — March 11-13, 2026!

Hybrid format: in-person hubs worldwide + online participation
👉 nf-co.re/events/2026/...

🧵👇

Release v1.3.3 - 2026-01-30 - Micrometer patch 3 · nf-core/nanostring What's Changed Updates r packages & uses wave for container(s) by @apeltzer in #156 Last fix for strict-syntax I guess by @apeltzer in #155 Fix version and changelog for release by @delfiterradas ...

Pipeline release! nf-core/nanostring v1.3.3 - v1.3.3 - 2026-01-30 - Micrometer patch 3!

Please see the changelog: https://github.com/nf-core/nanostring/releases/tag/1.3.3

Phil Ewels: Bioinformatics at Scale: nf-core + Nextflow The Bioinformatics CRO Webinar Series February 18, 2026: Phil Ewels gives a talk about Nextflow and nf-core for scalable, reproducible bioinformatics.

Next month, @ewels.bsky.social (Product Manager for OSS at @seqera.io)will be joining the Bioinformatics CRO webinar series to discuss #Nextflow, @nf-co.re, and exciting new features for reproducible bioinformatics at scale. 👇

hubs.la/Q040__J00

Pipeline release! nf-core/demo v1.1.0 - nf-core/demo 1.1.0 - Grammar Police!

Please see the changelog: https://github.com/nf-core/demo/releases/tag/1.1.0

Pipeline release! nf-core/pairgenomealign v2.2.2 - nf-core/pairgenomealign v2.2.2 – Juicy!

Please see the changelog: https://github.com/nf-core/pairgenomealign/releases/tag/2.2.2