Joint Genome Institute's Avatar

Joint Genome Institute

@jgi.doe.gov

We are a DOE User Facility providing access to integrative genome science capabilities. Located at Berkeley Lab. Work with us: http://jointgeno.me/proposals_B

4,166
Followers
99
Following
223
Posts
08.03.2024
Joined
Posts Following

Latest posts by Joint Genome Institute @jgi.doe.gov

Preview
CSP Large Scale Call | Joint Genome Institute The Community Science Program Large Scale Call is focused on genomic science projects that address sustainable biofuel and bioproducts production.

πŸ“£Deadline 4/9: The JGI is currently accepting LOIs for our Community Science Program's Large Scale call β€” for mission-relevant genomic science projects that leverage systems-based approaches.

Learn more: jointgeno.me/LargeScaleCSP

@berkeleylab.lbl.gov @biosci.lbl.gov
@axelvisel.bsky.social

05.03.2026 18:58 πŸ‘ 1 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0
Preview
An Enzyme System to Help Catalyze Bioproduction of Plastic | Joint Genome Institute By characterizing the structure and function of a methylthio-alkane reductase system, researchers could open avenues for using bacteria to produce ethylene and more.

By characterizing the structure and function of a methylthio-alkane reductase system, researchers could open avenues for using bacteria to produce ethylene and more. πŸ–₯️ 🧬

Full story: https://jgi.doe.gov/user-science/science-stories/enzyme-system-help-catalyze-bioproduction-plastic

04.03.2026 17:49 πŸ‘ 7 πŸ” 3 πŸ’¬ 0 πŸ“Œ 0
Post image Post image

Joint EMSL and @jgi.doe.gov 2026 meeting kicking off with a Highly inspiring and Amazing talk by the keynote speaker Kelly Wrighton @kcwrighton.bsky.social from @Colorado State University. β€œHidden metabolic currencies: from genes to community functions.β€œ

03.03.2026 21:47 πŸ‘ 2 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0
User Executive Committee | Joint Genome Institute The UEC represents the JGI user community and is responsible for providing input and advice on JGI policies and practices.

And, also relevant, I am here in part as a representative of the @jgi.doe.gov user community - as I was just elected to be a member of the "User Executive Committee" jgi.doe.gov/who-we-are/c...

03.03.2026 17:14 πŸ‘ 10 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0
Video thumbnail

We broke our sequencing record for FY25, by sequencing more than 1 Pb of data in a year! πŸ–₯️ 🧬

Learn more about our accomplishments in our annual Progress Report here: https://jointgeno.me/ProgressReport_FY25

03.03.2026 17:55 πŸ‘ 1 πŸ” 2 πŸ’¬ 0 πŸ“Œ 0
Preview
Integrating Experimentation with Data | Joint Genome Institute Join the Joint Genome Institute and the Environmental Molecular Sciences Laboratory for β€œEmpowering Automated Laboratories: Integrating Experimentation with Data.”

I note - I am in Seattle for the @jgi.doe.gov User Meeting - see more details here jgi.doe.gov/work-with-us... - this year the meeting is a joint meeting with EMSL

03.03.2026 17:07 πŸ‘ 10 πŸ” 3 πŸ’¬ 1 πŸ“Œ 0
Preview
JGI Announces FY26 Large Scale Portfolio for Our Community Science Program | Joint Genome Institute A series of headshots below the text: Congratulations to our Large Scale Call recipients"

"These projects highlight the creativity of our user community and their commitment to tackling fundamental scientific challenges..." β€”User Programs Deputy Tanja Woyke. πŸ–₯️🧬

More: https://jgi.doe.gov/user-science/science-stories/jgi-announces-fy26-large-scale-portfolio-our-community-science-program

02.03.2026 21:28 πŸ‘ 7 πŸ” 2 πŸ’¬ 0 πŸ“Œ 0
Preview
Senior Scientific Data Platform Engineer (Joint Genome Institute) in Bay Area, California, United States Berkeley Lab’s (LBNL) Joint Genome Institute (JGI) has an opening for a Senior Scientific Data Platform Engineer to play a critical role in...

πŸ“£JOB ALERT: Senior scientific data platform engineer wantedπŸ“£

Play a critical role in transforming raw scientific outputs into high-value, AI-ready data assets that support our mission. Learn more: https://jobs.lbl.gov/jobs/senior-scientific-data-platform-engineer-joint-genome-institute-7378 πŸ–₯️🧬

27.02.2026 20:14 πŸ‘ 1 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0

Register TODAY to learn all about our Critical Minerals & Materials called with @molecularfoundry.lbl.gov β€” Details below!

26.02.2026 16:52 πŸ‘ 0 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
Webinar poster titled "Mining New Frontiers," scheduled for February 27, 2026, at 9am PT. Includes a QR code for registration. Features logos of JGI, Molecular Foundry, and Berkeley Lab, and images of minerals and a growing plant.

Webinar poster titled "Mining New Frontiers," scheduled for February 27, 2026, at 9am PT. Includes a QR code for registration. Features logos of JGI, Molecular Foundry, and Berkeley Lab, and images of minerals and a growing plant.

Register by Feb. 26 to learn more on our joint Critical Minerals & Materials call w/@molecularfoundry.lbl.govβ€”for projects that integrate genomics w/nanoscale science to develop bio-based technologies.

Details: https://jgi.doe.gov/work-with-us/proposals/jgi-tmf-critical-minerals-and-materials-call

25.02.2026 18:06 πŸ‘ 1 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
Preview
2025 Progress Report | Joint Genome Institute Learn more about the JGI's 2025 accomplishments, including research and data output.

Our FY25 Progress Report is now live! We broke our own record by sequencing more than 1Pb of data in a yearβ€”on top of serving 2,627 users w/active proposals, plus 17K researchers making use of our data.
πŸ–₯️ 🧬 🌱 πŸ„ 🦠 πŸ§ͺ

Full report: https://jgi.doe.gov/user-science/science-stories/2025-progress-report

24.02.2026 17:54 πŸ‘ 5 πŸ” 4 πŸ’¬ 0 πŸ“Œ 0
This image features a banner for the American Academy of Microbiology, announcing a new fellow for the Class of 2026. It includes a headshot of a smiling individual and logos for the American Society for Microbiology and the American Academy of Microbiology.

This image features a banner for the American Academy of Microbiology, announcing a new fellow for the Class of 2026. It includes a headshot of a smiling individual and logos for the American Society for Microbiology and the American Academy of Microbiology.

Congrats to Emiley @emileyeloe-fadrosh.bsky.social on being selected as a fellow for the American Academy of Microbiology's Class of 2026. Full story: go.lbl.gov/Eloe-Fadrosh_AAM

More on our Metagenome Program: https://jgi.doe.gov/science-programs/metagenome-program

@asm.org @microbiomedata.org

23.02.2026 21:24 πŸ‘ 11 πŸ” 2 πŸ’¬ 1 πŸ“Œ 0
Webinar poster titled "Mining New Frontiers," scheduled for February 27, 2026, at 9am PT. Includes a QR code for registration. Features logos of JGI, Molecular Foundry, and Berkeley Lab, and images of minerals and a growing plant.

Webinar poster titled "Mining New Frontiers," scheduled for February 27, 2026, at 9am PT. Includes a QR code for registration. Features logos of JGI, Molecular Foundry, and Berkeley Lab, and images of minerals and a growing plant.

Join us Feb. 27 for more on our joint Critical Minerals & Materials call with @molecularfoundry.lbl.gov β€” for projects that integrate genomics w/nanoscale science to develop bio-based technologies.
πŸ–₯️🧬

Details: https://jgi.doe.gov/work-with-us/proposals/jgi-tmf-critical-minerals-and-materials-call

19.02.2026 16:45 πŸ‘ 3 πŸ” 2 πŸ’¬ 0 πŸ“Œ 0
small rounded shapes against a black backdrop are colored pink on either side and green in the center

small rounded shapes against a black backdrop are colored pink on either side and green in the center

Auxenochlorella's streamlined genome w/precise gene targeting transforms this oil-producing alga into a powerful platform for developing ​​bio-based industrial products!
πŸ–₯️ 🧬

More: https://jgi.doe.gov/user-science/science-stories/complete-genome-oil-rich-alga-reveals-ideal-platform-bioengineering

18.02.2026 16:54 πŸ‘ 2 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0
Preview
FICUS | Joint Genome Institute The FICUS call targets high-risk/high-payoff proposals, providing access to the capabilities and expertise of multiple DOE National User Facilities in one research proposal.

DEADLINE THURSDAY: Submit your letter of intent for our FICUS call to access resources from multiple facilities under one proposal.

We're looking for high-risk/high-payoff projects that leverage a broad range of the capabilities.

Learn more: https://jgi.doe.gov/work-with-us/proposals/FICUS

17.02.2026 17:45 πŸ‘ 1 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0
Post image

πŸ“£ We're joining up with @jgi.doe.gov in a joint Critical Minerals & Materials Call πŸ‘€: https://bit.ly/3MvzWy6

This is an opportunity to use the capabilities and expertise of both facilities. The call opens March 1. You can register for our Feb. 27 webinar now: https://bit.ly/3Oox1I0

13.02.2026 21:46 πŸ‘ 4 πŸ” 2 πŸ’¬ 0 πŸ“Œ 0
Webinar poster titled "Mining New Frontiers," scheduled for February 27, 2026, at 9am PT. Includes a QR code for registration. Features logos of JGI, Molecular Foundry, and Berkeley Lab, and images of minerals and a growing plant.

Webinar poster titled "Mining New Frontiers," scheduled for February 27, 2026, at 9am PT. Includes a QR code for registration. Features logos of JGI, Molecular Foundry, and Berkeley Lab, and images of minerals and a growing plant.

Join us Feb. 27 for more on our joint Critical Minerals & Materials call with @molecularfoundry.lbl.gov β€” for projects that integrate genomics w/nanoscale science to develop bio-based technologies.
πŸ–₯️🧬

Details: https://jgi.doe.gov/work-with-us/proposals/jgi-tmf-critical-minerals-and-materials-call

12.02.2026 16:52 πŸ‘ 2 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
Preview
Data Discovery Tool Helps Identify Microbial Roles within Metagenomes | Joint Genome Institute Protein annotations provide insights into environmental tendencies

The Metagenome Stability Diagram uses gene markers across ecosystems to understand how environmental conditions constrain metabolic activity in microbiomes. πŸ–₯️🧬🦠

https://jgi.doe.gov/user-science/science-stories/data-discovery-tool-helps-identify-microbial-roles-within-metagenomes

11.02.2026 18:11 πŸ‘ 6 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0
Preview
Secrets of the Needles: What Microbes do on Conifer Leaves | Joint Genome Institute Novel study looks at microbiomes in aerial surfaces of plants, and their roles in plant health and environmental processes

This study looks at microbiomes in aerial surfaces of plants and their roles in environmental processes, in order to advance microbiome utility across the bioeconomy. @ucmerced.bsky.social
πŸ–₯️🧬 🦠 🌱

https://jgi.doe.gov/user-science/science-stories/secrets-needles-what-microbes-do-conifer-leaves

09.02.2026 21:15 πŸ‘ 5 πŸ” 3 πŸ’¬ 1 πŸ“Œ 1
Flyer for the joint meeting with EMSL and the JGI to be held at the Seattle Marriott Waterfront March 3–5. The flyer includes an image of the Seattle skyline.

Flyer for the joint meeting with EMSL and the JGI to be held at the Seattle Marriott Waterfront March 3–5. The flyer includes an image of the Seattle skyline.

🚨Last chance!🚨
Registration closes at 11:59 p.m. PT TODAY for "Empowering Automated Laboratories: Integrating Experimentation with Data."

Register now: http://bit.ly/EMSL-JGIusermeeting2026
Info: usermeeting.jgi.doe.gov

08.02.2026 16:45 πŸ‘ 2 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
Preview
Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering | Joint Genome Institute Streamlined genome with precise gene targeting transforms oil-producing alga into a powerful platform for developing ​​bio-based industrial products.

New research points to the oil-producing alga Auxenochlorella as a powerful platform for producing specialty oils, chemical feedstocks and industrial precursorsβ€”as well as to better enable the mining of critical minerals and materials.
πŸ–₯️🧬

@berkeleylab.lbl.gov @axelvisel.bsky.social @biosci.lbl.gov

05.02.2026 19:05 πŸ‘ 3 πŸ” 3 πŸ’¬ 0 πŸ“Œ 0
Preview
a woman in a judge 's robes is pointing at someone ALT: a woman in a judge 's robes is pointing at someone

UPDATE: DEADLINE EXTENDED
You have until Feb. 8 to register for our joint Annual Meeting with the Environmental Molecular Sciences Laboratory: "Empowering Automated Laboratories: Integrating Experimentation with Data"

INFO: usermeeting.jgi.doe.gov
REG: bit.ly/EMSL-JGIuser...

πŸ–₯️🧬 🦠 🌱 πŸ§ͺ πŸ„

04.02.2026 19:12 πŸ‘ 0 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

LAST CHANCE to submit abstracts for this year's "Empowering Automated Laboratories: Integrating Experimentation with Data" joint Annual Meeting with EMSL.

Register Now: bit.ly/EMSL-JGIuser...

@axelvisel.bsky.social @simrouxvirus.bsky.social @danudwary.secondarymetabolism.com

03.02.2026 17:54 πŸ‘ 2 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
Promotional poster for the EMSL & JGI User Meeting on 'Empowering Automated Laboratories: Integrating Experiment with Data', featuring speaker Kelly Wrighton. The event is scheduled for March 3-5 in Seattle, Washington. Contains a QR code for registration and an image of Seattle's skyline.

Promotional poster for the EMSL & JGI User Meeting on 'Empowering Automated Laboratories: Integrating Experiment with Data', featuring speaker Kelly Wrighton. The event is scheduled for March 3-5 in Seattle, Washington. Contains a QR code for registration and an image of Seattle's skyline.

Don't miss @kcwrighton.bsky.social of Colorado State University at this year's Integrating Experimentation with Data Annual Meeting, during our session on Decoding the Structure-Function Secrets of Environmental Microbiomes.
πŸ–₯️ 🧬 🌱 🦠 πŸ§ͺ πŸ„ πŸ„β€πŸŸ«

More info: usermeeting.jgi.doe.gov

02.02.2026 21:18 πŸ‘ 2 πŸ” 1 πŸ’¬ 1 πŸ“Œ 0
Preview
Integrating Experimentation with Data | Joint Genome Institute Join the Joint Genome Institute and the Environmental Molecular Sciences Laboratory for β€œEmpowering Automated Laboratories: Integrating Experimentation with Data.”

DEADLINE FEB. 3: We hope your weekend plans include registering for our joint Annual Meeting w/the Environmental Molecular Sciences Laboratory! Learn more about "Integrating Experimentation with Data": usermeeting.jgi.doe.gov

Workshops: jgi.doe.gov/work-with-us...
Register: bit.ly/EMSL-JGIuser...

30.01.2026 20:20 πŸ‘ 0 πŸ” 1 πŸ’¬ 0 πŸ“Œ 1
Video thumbnail

⏱️Deadline reminder: February 3rd, 2026

Register and submit your abstract for the upcoming @jgi.doe.gov -EMSL meeting in Seattle

Do it now, or do it like Kermit. Up to you.

jgi.doe.gov/work-with-us...

27.01.2026 19:32 πŸ‘ 5 πŸ” 3 πŸ’¬ 0 πŸ“Œ 1
Promotional graphic for the 2026 EMSL-JGI User Meeting, titled "Empowering Automated Laboratories: Integrating Experimentation with Data." Seattle, Washington, from March 3-5, 2026, featuring keynote speaker Jim Collins. The graphic includes a QR code and registration link: bit.ly/EMSL-JGIusermeeting2026.

Promotional graphic for the 2026 EMSL-JGI User Meeting, titled "Empowering Automated Laboratories: Integrating Experimentation with Data." Seattle, Washington, from March 3-5, 2026, featuring keynote speaker Jim Collins. The graphic includes a QR code and registration link: bit.ly/EMSL-JGIusermeeting2026.

Don't miss Jim Collins of @mit.edu, keynote speaker at this year's Integrating Experimentation with Data Annual Meeting, during our session on Genomic Ingenuity: Crafting the Future of BioDesign. πŸ–₯️ 🧬 🌱 🦠 πŸ§ͺ πŸ„

More info: usermeeting.jgi.doe.gov

@berkeleylab.lbl.gov @biosci.lbl.gov

27.01.2026 16:51 πŸ‘ 1 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0
Post image

Don't miss @carrieaeckert.bsky.social of Oak Ridge Nat'l Lab at this year's Integrating Experimentation with Data Annual Meeting, during our session on Genomic Ingenuity: Crafting the Future of BioDesign.

More info: usermeeting.jgi.doe.gov
πŸ–₯️ 🧬 🌱 🦠 πŸ§ͺ πŸ„

22.01.2026 17:11 πŸ‘ 0 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
Victorian-style AI slop. A small girl in a blue dress whose name is not Alice for copyright reasons stands in a forest and stares up at an absurdly giant mushroom, surrounded by many other biologically inaccurate fungi. The scene attempts to hint at fungal diversity, scale, and deep evolutionary relationships. Roughly what happens when you reanalyze ~2,000 fungal genomes and realize how much biology is still hiding in the woods.

Victorian-style AI slop. A small girl in a blue dress whose name is not Alice for copyright reasons stands in a forest and stares up at an absurdly giant mushroom, surrounded by many other biologically inaccurate fungi. The scene attempts to hint at fungal diversity, scale, and deep evolutionary relationships. Roughly what happens when you reanalyze ~2,000 fungal genomes and realize how much biology is still hiding in the woods.

What can we learn from comparing ~2,000 fungal genomes?

Find out about:

πŸ„evolutionary transitions
πŸ„lifestyles
πŸ„genome dynamics
πŸ„sampling gaps
πŸ„efforts to uncover the remaining fungal dark matter

New review by @jgi.doe.gov's Stephen Mondo and Igor Grigoriev

www.nature.com/articles/s41...

20.01.2026 20:34 πŸ‘ 10 πŸ” 7 πŸ’¬ 0 πŸ“Œ 0
Preview
Mapping the Earth’s Hidden Fungal Kingdom | Joint Genome Institute Leveraging massive comparative genomics to decode millions of mystery genes and lay a future-ready foundation

β€œThe enormous diversity of fungal genomes...offers catalogs of enzymes, secondary metabolites & other parts lists for biotechnology, bioenergy & biomaterials."β€”Igor Grigoriev, Fungal & Algal Program Head.
πŸ–₯οΈπŸ§¬πŸ„πŸ„β€πŸŸ«

https://jgi.doe.gov/user-science/science-stories/mapping-earths-hidden-fungal-kingdom

21.01.2026 17:14 πŸ‘ 5 πŸ” 5 πŸ’¬ 0 πŸ“Œ 0